A. Mahfouz at Department of Human Genetics Leiden University Medical Centre Leiden The Netherlands - Research Interests, Publications & Academic Profile

A. Mahfouz

University Name

Netherlands

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Research Interests

Cell Biology

100%

Biochemistry

40%

Cell Analysis

50%

Computational Biology

40%

Murine Model

40%

Spatial Transcriptomic

30%

Tissue Biology

30%

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Articles14

An integrated single‐cell <scp>RNA</scp>‐seq atlas of the mouse hypothalamic paraventricular nucleus links transcriptomic and functional types

Article Link

Year:

2024

SIRV: spatial inference of RNA velocity at the single-cell resolution

Article Link

Year:

2024

Integration of mass cytometry and mass spectrometry imaging for spatially resolved single-cell metabolic profiling

Article Link

Year:

2024

Spatial transcriptomics reveal markers of histopathological changes in Duchenne muscular dystrophy mouse models

Article Link

Year:

2023

scTopoGAN: unsupervised manifold alignment of single-cell data

Article Link

Year:

2023

Single-cell reference mapping to construct and extend cell-type hierarchies

Article Link

Year:

2023

Cell type matching across species using protein embeddings and transfer learning

Article Link

Year:

2023

A comprehensive mouse kidney atlas enables rare cell population characterization and robust marker discovery

Article Link

Year:

2023

Analyzing cell-type-specific dynamics of metabolism in kidney repair

Article Link

Year:

2022

Community-driven ELIXIR activities in single-cell omics

Article Link

Year:

2022

Single-Cell Transcriptomics Reveals Discrete Steps in Regulatory T Cell Development in the Human Thymus

Article Link

Year:

2022

scMoC: single-cell multi-omics clustering

Article Link

Year:

2022

Single-Cell Transcriptomics Links Loss of Human Pancreatic β-Cell Identity to ER Stress

Article Link

Year:

2021

Differential analysis of binarized single-cell RNA sequencing data captures biological variation

Article Link

Year:

2021

Collaborators13

Roel Bijkerk

NETHERLANDS

Annemieke Aartsma-Rus

Professor of Translational Genetics

Leiden University Medical Center

NETHERLANDS

Marcel Reinders

Delft University of Technology

NETHERLANDS

Martin Giera

Assoc. Prof.

Universitair Medisch Centrum Utrecht

NETHERLANDS

Patricia M. Palagi

Head of Training

SIB Swiss Institute of Bioinformatics

SWITZERLAND

Boudewijn Lelieveldt

Delft University of Technology

NETHERLANDS

Onno Meijer

Professor Neuroendocrinology of Corticosteroids

Leiden University Medical Center

NETHERLANDS

Pietro Spitali

Assistant Professor

Universitair Medisch Centrum Utrecht

NETHERLANDS

GANGQI WANG

Leiden University Medical Center

NETHERLANDS

Françoise Carlotti

Associate Professor

Leiden University Medical Center

NETHERLANDS

Rob C. Hoeben

Leiden University Medical Center

NETHERLANDS

Bernard van den Berg

Assistant professor

Leiden University Medical Center

NETHERLANDS

Tamim Abdelaal

Delft University of Technology

NETHERLANDS

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A. Mahfouz

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Research Interests

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Articles14

An integrated single‐cell <scp>RNA</scp>‐seq atlas of the mouse hypothalamic paraventricular nucleus links transcriptomic and functional types

SIRV: spatial inference of RNA velocity at the single-cell resolution

Integration of mass cytometry and mass spectrometry imaging for spatially resolved single-cell metabolic profiling

Spatial transcriptomics reveal markers of histopathological changes in Duchenne muscular dystrophy mouse models

scTopoGAN: unsupervised manifold alignment of single-cell data

Single-cell reference mapping to construct and extend cell-type hierarchies

Cell type matching across species using protein embeddings and transfer learning

A comprehensive mouse kidney atlas enables rare cell population characterization and robust marker discovery

Analyzing cell-type-specific dynamics of metabolism in kidney repair

Community-driven ELIXIR activities in single-cell omics

Single-Cell Transcriptomics Reveals Discrete Steps in Regulatory T Cell Development in the Human Thymus

scMoC: single-cell multi-omics clustering

Single-Cell Transcriptomics Links Loss of Human Pancreatic &beta;-Cell Identity to ER Stress

Differential analysis of binarized single-cell RNA sequencing data captures biological variation

Collaborators13

Roel Bijkerk

Annemieke Aartsma-Rus

Marcel Reinders

Martin Giera

Patricia M. Palagi

Boudewijn Lelieveldt

Onno Meijer

Pietro Spitali

GANGQI WANG

Françoise Carlotti

Rob C. Hoeben

Bernard van den Berg

Tamim Abdelaal

How do Bangladeshi students reach out?

Single-Cell Transcriptomics Links Loss of Human Pancreatic β-Cell Identity to ER Stress