PhD Studentship - Harnessing Mussel Behaviour and Machine Learning for Coastal Water Quality Monitoring
[£20,780 per year plus payment of tuition fees (Home rate) and a Research Training Support Grant of £5,000 over 3.5 years.]
The University of Exeter invites applications for a fully funded PhD studentship focused on developing advanced biosensor technology for coastal water quality monitoring. This multidisciplinary project leverages the natural sensitivity of mussels to environmental stressors, such as pollution, eutrophication, and harmful algal blooms (HABs), to create a real-time monitoring system capable of providing early warnings of ecosystem stress. Mussels exhibit distinct valve gape behaviours in response to changes in water quality, making them powerful bio-sensors for environmental monitoring.
The project aims to transform an existing prototype discrete gape-sensor unit into a fully integrated, deployable environmental monitoring solution. Building on recent innovations at Exeter, the research will expand current technology to include automated live analysis, integrating machine learning algorithms to interpret complex behavioural patterns of mussels. This will enable the generation of real-time alerts and warnings, allowing for rapid response to pollution events or the onset of HABs. Technical innovation will combine robust low-power hall-sensor hardware, wireless communication, and sophisticated analytical software.
Central to the project is the training of machine learning models to distinguish between normal physiological behaviour (such as diurnal rhythms and feeding responses) and abnormal stress-induced patterns. The research requires interdisciplinary expertise, including biosciences to characterise physiological responses under controlled exposures, and engineering to design hardware, firmware, and analytical pipelines for autonomous field operation.
The societal and industrial impact of this system is significant. Coastal communities and aquaculture industries are vulnerable to HABs and pollution events that can cause mass mortalities, economic loss, and human health risks. A low-cost, deployable sensor network based on mussel behaviour could provide real-time environmental intelligence, supporting regulatory agencies, aquaculture managers, and marine spatial planners. As climate change increases the frequency and intensity of HABs, proactive management tools will become increasingly vital.
The project will be delivered through multidisciplinary collaboration, offering a unique training environment. The supervisory team includes Dr Robert Ellis (Biosciences), who provides expertise in bivalve physiology and aquaculture; Dr Jun Chew (Engineering), who leads sensor design, system integration, and embedded software development; and Prof Mike Allen, who brings industrial engagement through SeaGen, a blue-tech company supporting product development and market strategies. This team bridges fundamental biology, applied engineering, and industrial innovation.
Funding for this studentship includes an annual stipend of £20,780, payment of tuition fees at the Home rate, and a Research Training Support Grant of £5,000 over 3.5 years. The position is based at the Streatham Campus, University of Exeter. Applicants should hold or expect to obtain a first or upper second class UK Honours degree, or equivalent, in a relevant discipline such as biosciences, engineering, computer science, or environmental science. Experience in experimental biology, sensor engineering, or machine learning is desirable. International applicants must meet English language requirements.
To apply, visit the University of Exeter funding award page and use the online application portal. For project-specific enquiries, contact Dr Robert Ellis at [email protected]. The application deadline is 12 January 2026.