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Pooja Gupta

1 week ago

PhD and Postdoctoral Positions in AI-driven Multi-Omics, Bioinformatics, and Computational Biomedicine Universitätsklinikum Erlangen in Germany

Degree Level

PhD, Postdoc

Field of study

Computer Science

Funding

Both positions are funded by a BMFTR project. Employment is according to the collective agreement for the public service of the German states (TV-L), with salary classification depending on qualifications and personal requirements. Additional benefits include pension coverage through the Federal and State Pension Scheme (VBL), structured onboarding, training, and a comprehensive health promotion program. The positions are for 36 months, with 38.5 hours/week for postdoc and 25.025 hours/week for

Deadline

Mar 31, 2026

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Country

Germany

University

Universitätsklinikum Erlangen

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Keywords

Computer Science
Biomarker Research
Biology
Parkinson's Disease
Inflammatory Bowel Disease
Computational Biology
Systems Biology
Medical Science
Statistics
Bioinformatic
Machine learning

About this position

The Department of Stem Cell Biology at Universitätsklinikum Erlangen, led by Dr. Pooja Gupta, is recruiting for two exciting positions: a Postdoctoral Researcher and a PhD student. These roles are part of a BMFTR-funded project titled “AI-Driven Multi-Omics Integration for Predicting IBD-PD Comorbidity Progression,” focusing on the intersection of artificial intelligence, multi-omics data integration, and disease biology, with applications in Parkinson’s disease (PD) and inflammatory bowel disease (IBD).

Successful candidates will join a newly established, interdisciplinary research group in bioinformatics and computational biomedicine. The research involves developing and applying advanced AI models, such as graph neural networks and variational autoencoders, to analyze large-scale transcriptomic, proteomic, and metabolomic datasets. The aim is to construct molecular interaction networks, perform biomarker discovery, and conduct simulation-based perturbation analyses, all within a translational research environment that collaborates closely with clinicians and experimental scientists.

The postdoctoral position requires a PhD in a relevant field, strong machine learning and statistical modeling skills, experience with multi-omics data, and proficiency in Python/R and deep learning frameworks. The PhD position requires a Master’s degree in a quantitative field, programming skills, experience with high-throughput biological data, and strong English communication abilities. Both positions offer a highly interdisciplinary environment, access to state-of-the-art computational infrastructure, and opportunities for national and international collaboration.

Employment is for 36 months, with competitive salary and benefits according to the German public sector collective agreement (TV-L), including pension coverage and health promotion programs. The application deadline for both positions is March 31, 2026. Interested candidates should apply online via the provided links and may contact Dr. Pooja Gupta for further information.

Keywords: AI-driven multi-omics, bioinformatics, computational biomedicine, Parkinson’s disease, inflammatory bowel disease, biomarker discovery, machine learning, translational research, systems biology.

Funding details

Both positions are funded by a BMFTR project. Employment is according to the collective agreement for the public service of the German states (TV-L), with salary classification depending on qualifications and personal requirements. Additional benefits include pension coverage through the Federal and State Pension Scheme (VBL), structured onboarding, training, and a comprehensive health promotion program. The positions are for 36 months, with 38.5 hours/week for postdoc and 25.025 hours/week for

What's required

For the postdoctoral position: PhD in Bioinformatics, Computational Biology, Data Science, or a related field; strong background in machine learning and statistical modeling; 1–3 years of postdoctoral or equivalent research experience in computational life sciences; publication record in peer-reviewed journals; experience with multi-omics data integration; proficiency in Python/R and deep learning frameworks; strong interest in translational biomedical research. For the PhD position: Master’s degree in Bioinformatics, Computational Biology, Computer Science, Data Science, Systems Biology, or a closely related quantitative field; solid programming skills in Python and/or R; strong foundation in statistics and machine learning; prior experience with high-throughput biological data; experience with Linux/HPC and version control is desirable; very good English communication skills.

How to apply

Apply online via the provided application links for the respective positions. Prepare your application documents as required by Universitätsklinikum Erlangen. For questions, contact Dr. Pooja Gupta. Ensure your application is submitted before the deadline.

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