Simon Rasmussen at University of Copenhagen - Research Interests, Publications & Academic Profile

Simon Rasmussen

Associate Professor

University of Copenhagen

Denmark

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Research Interests

Biostatistics

60%

Cell Biology

50%

Medical Science

50%

Genomic

40%

Population Genetics

30%

Cancer Biology

30%

Deep Learning

30%

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Articles20

Imputation of label-free quantitative mass spectrometry-based proteomics data using self-supervised deep learning

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Year:

2024

The evolutionary impact of childhood cancer on the human gene pool

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2024

FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data

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2024

Mass spectrometry-based proteomics data from thousands of HeLa control samples

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2024

100 ancient genomes show repeated population turnovers in Neolithic Denmark

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2024

An assessment of the value of deep neura networks in genetic risk prediction for surgically relevant outcomes

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2024

An assessment of the value of deep neural networks in genetic risk prediction for surgically relevant outcomes

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2024

BinBencher: Fast, flexible and meaningful benchmarking suite for metagenomic binning

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2024

Modeling nascent transcription from chromatin landscape and structure

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2024

Non-linear genetic regulation of the blood plasma proteome

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2024

Global within-species phylogenetics of sewage microbes suggest that local adaptation shapes geographical bacterial clustering

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Year:

2023

Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan

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2023

Genetic predisposition and evolutionary traces of pediatric cancer risk: a prospective 5-year population-based genome sequencing study of children with CNS tumors

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2023

Mapache: a flexible pipeline to map ancient DNA

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2023

Deep learning–based integration of genetics with registry data for stratification of schizophrenia and depression

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2022

Machine learning and deep learning applications in microbiome research

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2022

Genome binning of viral entities from bulk metagenomics data.

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2022

SCAI promotes error-free repair of DNA interstrand crosslinks via the Fanconi anemia pathway.

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2022

Defining NASH from a Multi-Omics Systems Biology Perspective

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Year:

2021

Author Correction: Population genomics of the Viking world

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Year:

2021

Collaborators35

Karin A W Wadt

Associated Professor

University of Copenhagen

DENMARK

Olivier Delaneau

Assistant Professor

University of Lausanne

SWITZERLAND

Daniel Lawson

University of Bristol

UNITED KINGDOM

Mikael Knip

Professor

University of Helsinki

FINLAND

Julien P Duxin

DENMARK

yunpeng wang

associate professor

University of Oslo

NORWAY

Søren Sørensen

Københavns Universitet

DENMARK

Niels N. Johannsen

Aarhus University

DENMARK

Pernille Bangsgaard

Københavns Universitet

DENMARK

Ida Moltke

Associate professor

University of Copenhagen

DENMARK

Knud Nor Nielsen

Københavns Universitet

DENMARK

Kurt Kjær

Københavns Universitet

DENMARK

Anders Rosengren

DENMARK

Henry Webel

Københavns Universitet

DENMARK

Kenya Honda

JAPAN

Michael Lisby

Københavns Universitet

DENMARK

Rolf Sommer Kaas

Technical University of Denmark

DENMARK

Ling Deng

Københavns Universitet

DENMARK

Evan Irving-Pease

Assistant Professor

University of Copenhagen

DENMARK

Wesley Thompson

Professor in Residence

University of California, San Diego

UNITED STATES

Marie Louise Schjellerup Jørkov

Københavns Universitet

DENMARK

Martin Sikora

Associate Professor

University of Copenhagen

DENMARK

Martin Sillesen

Research associate professor

University of Copenhagen

DENMARK

Ying Liu

Associate Professor

University of Copenhagen

DENMARK

Ivo Hendriks

Associate Professor

University of Copenhagen

DENMARK

Patrick Munk

Technical University of Denmark

DENMARK

Irene Gallina

Københavns Universitet

DENMARK

Samuel Neuenschwander

SIB Swiss Institute of Bioinformatics

SWITZERLAND

Marie Louise Jespersen

Technical University of Denmark

DENMARK

Frank Aarestrup

Technical University of Denmark

DENMARK

Michael Nielsen

Professor

University of Copenhagen

DENMARK

Tommi Vatanen

University of Helsinki

FINLAND

Tharsika Vimala

Københavns Universitet

DENMARK

Morten Allentoft

Professor

Curtin University

AUSTRALIA

Gabriele Scorrano

Assistant Professor

DENMARK

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