Frank Aarestrup

Technical University of Denmark

Denmark

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Research Interests

Microbiology

100%

Virology

60%

Next-generation Sequencing

60%

Antibiotic Resistance

60%

Environmental Microbiology

50%

Molecular Epidemiology

50%

Bacteria

50%

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Articles20

Genomic analysis of Salmonella isolated from canal water in Bangkok, Thailand

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Year:

2024

A novel metagenomic approach uncovers phage genes as markers for increased disinfectant tolerance in mixed Listeria monocytogenes communities

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Year:

2024

Dispersion of antimicrobial resistant bacteria in pig farms and in the surrounding environment

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Year:

2024

Discovery of Vibrio cholerae in Urban Sewage in Copenhagen, Denmark

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Year:

2024

Transmission of antimicrobial resistance in the gut microbiome of gregarious cockroaches: the importance of interaction between antibiotic exposed and non-exposed populations

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Year:

2024

SpanSeq: similarity-based sequence data splitting method for improved development and assessment of deep learning projects

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Year:

2024

VirulenceFinder for Enterococcus faecium and Enterococcus lactis : an enhanced database for detection of putative virulence markers by using whole-genome sequencing data

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Year:

2024

Flankophile: a bioinformatic pipeline for prokaryotic genomic synteny analysis

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Year:

2024

ARGprofiler—a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets

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Year:

2024

Complete genome sequences of Cytobacillus sp., Domibacillus sp., Enterobacter sp., Neisseria sp., Pseudomonas sp., and Streptococcus sp. strains from human clinical infections collected at diagnostic units in 2020

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Year:

2024

Global within-species phylogenetics of sewage microbes suggest that local adaptation shapes geographical bacterial clustering

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Year:

2023

Molecular Characterization of Staphylococcus aureus Isolated from Raw Milk and Humans in Eastern Tanzania: Genetic Diversity and Inter-Host Transmission

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Year:

2023

Predicting β-lactam susceptibility from the genome of Streptococcus pneumoniae and other mitis group streptococci

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Year:

2023

Antimicrobial resistance monitoring in the Danish swine production by phenotypic methods and metagenomics from 1999 to 2018

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Year:

2023

Interplay between strain fitness and transmission frequency determines prevalence of antimicrobial resistance

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Year:

2023

Rise and fall of SARS-CoV-2 variants in Rotterdam

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Year:

2023

Quantitative PCR versus metagenomics for monitoring antibiotic resistance genes: balancing high sensitivity and broad coverage

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Year:

2023

Distinctive hospital and community resistomes in Scottish urban wastewater

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Year:

2023

Nanopore sequencing technology for clinical diagnosis of infectious diseases where laboratory capacity is meager: A case report

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Year:

2023

The quantitative effect of antimicrobial usage in Danish pig farms on the abundance of antimicrobial resistance genes in slaughter pigs

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Year:

2023

Collaborators25

Simon Rasmussen

Associate Professor

University of Copenhagen

DENMARK

Christian Brinch

Technical University of Denmark

DENMARK

Ana Sofia Ribeiro Duarte

Technical University of Denmark

DENMARK

Richard Molenkamp

Erasmus University Rotterdam

NETHERLANDS

Lisbeth Truelstrup Hansen

Technical University of Denmark

DENMARK

Philip Clausen

Technical University of Denmark

DENMARK

Vibe Dalhoff Andersen

Technical University of Denmark

DENMARK

Tine Hald

Technical University of Denmark

DENMARK

Judit Szarvas

Københavns Universitet

DENMARK

Paw Dalgaard

Technical University of Denmark

DENMARK

Thomas Nordahl Petersen

Technical University of Denmark

DENMARK

Henry Webel

Københavns Universitet

DENMARK

Gertjan Medema

Delft University of Technology

NETHERLANDS

Pimlapas Leekitcharoenphon

Technical University of Denmark

DENMARK

Saria Otani

Technical University of Denmark

DENMARK

Rolf Sommer Kaas

Technical University of Denmark

DENMARK

Amalia Bogri

Technical University of Denmark

DENMARK

Patrick Munk

Technical University of Denmark

DENMARK

Jette Sejer Kjeldgaard

Technical University of Denmark

DENMARK

Marie Louise Jespersen

Technical University of Denmark

DENMARK

Ana Rita Rebelo

Technical University of Denmark

DENMARK

Evelien de Schepper

Erasmus University Rotterdam

NETHERLANDS

Mirena Ivanova

Technical University of Denmark

DENMARK

Celia Manaia

Associate Professor, Habilitation

Universidade Católica Portuguesa

PORTUGAL

Hannah-Marie Martiny

Technical University of Denmark

DENMARK

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