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Earlham Institute

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Funded PhD in Agentic AI for Interpreting Nucleotide Foundation Models at Earlham Institute Earlham Institute in United Kingdom

Degree Level

PhD

Field of study

Computer Science

Funding

Full funding available

Deadline

Jul 30, 2026

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Country

United Kingdom

University

Earlham Institute

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Keywords

Computer Science
Biomedical Engineering
Biology
Mathematics
Computational Mathematics
Explainable Ai
Genomic
Statistics
Bioinformatic
Machine learning

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About this position

Funded PhD opportunity at the Earlham Institute, Norwich, United Kingdom. This project is titled From Explanation to Experiment: Agentic AI for Interpreting Nucleotide Foundation Models and sits at the intersection of computer science, bioinformatics, genomics, machine learning, biomedical engineering, and computational mathematics.

The PhD will develop agentic explainable AI methods for DNA and RNA foundation models. The research aims to move beyond model explanations toward biologically grounded, testable hypotheses. Topics include explanation quality, faithfulness to model behaviour, robustness to perturbations, biological plausibility, knowledge-grounded reasoning, ontologies, knowledge graphs, and literature-derived evidence.

The project is based in the AI for Bioscience group and may involve interpreting regulatory sequence features, RNA motifs, gene expression models, and other sequence-to-function prediction tasks. The student will receive interdisciplinary training in frontier AI model training, explainable AI, knowledge graphs, genomics, and open-source scientific software.

Eligibility: at least a UK-equivalent Bachelors (Honours) 2:1 or a UK-equivalent Masters degree. Strong AI and/or computational skills are preferred. No prior biological training is required, but enthusiasm for interdisciplinary research is essential. English language requirement: IELTS 6.5 overall with 6.0 in each category.

Funding: fully funded for four years, with tuition fees covered at Home or International rate, a tax-free stipend at the UKRI rate (£21,805 in 2026/7), and £5,000 per year for research training.

Location: Norwich, United Kingdom. Start date: 1 October 2026. Deadline shown on the page: 30 July 2026.

Funding details

Full funding including tuition fees and living expenses is available for this position. The scholarship covers all educational costs and provides a monthly stipend.

How to apply

Please submit your application including a cover letter, CV, academic transcripts, and contact information for two references. Applications should be sent via the online portal before the deadline.

More information can be found here

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