Friedrich Schiller University Jena
3 weeks ago
PhD in Bioinformatics: Quantifying Viral Quasispecies with Graph-Based Tool Development Friedrich Schiller University Jena in Germany
Degree Level
PhD
Field of study
Computer Science
Funding
75% funded position (30 hours per week), initially fixed-term until 2029-06-30 with a planned total contract term of four years. Salary according to TV-L up to E13 depending on qualifications, including a special annual payment. 30 days of vacation per year plus two additional days off on December 24 and 31.
Deadline
Oct 19, 2026
Country
Germany
University
Friedrich Schiller University Jena
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About this position
Friedrich Schiller University Jena in Germany is advertising a Doctoral Researcher in Bioinformatics position in the professorship of Viral Ecology and Omics (VEO).
The project, titled “Quantifying quasispecies: Tool development and applications”, focuses on developing a graph structure to represent viral quasispecies and building tools to analyse them. The work connects sequence data with gene, function, and experimental/environmental metadata to identify mutational hotspots, link mutations to functional effects, and correlate virus variants with environmental conditions.
This PhD project sits within the Viral Ecology and Omics Group and the newly founded Collaborative Research Centre VirusREvolution, offering a multidisciplinary environment spanning bioinformatics, virology, photonics, omics, microscopy, microbiology, artificial intelligence, and computational modelling. The group provides access to high-performance computing resources, large genomic/metagenomic datasets, and both wet-lab and dry-lab infrastructure.
Eligibility highlights: applicants should have a BSc or MSc in bioinformatics, extensive coding experience in Python, Rust, or C/C++, and experience with graphs, sequence variation graphs, and tool building. Knowledge of metagenomics, genomics, viruses, or bacteriophages is beneficial. Strong motivation, organisational skills, and excellent English communication are required; German is advantageous.
Funding and conditions: the position is 75% funded (30 hours/week), paid according to TV-L up to E13 depending on qualifications, with a special annual payment. The contract starts on 1 January 2027 or as soon as possible thereafter, initially fixed-term until 30 June 2030, with a planned total duration of four years. Benefits include 30 days of vacation per year plus two additional days off on 24 and 31 December.
How to apply: submit your application through the university’s online form by 19 October 2026. Review the applicant data privacy information before applying.
Funding details
75% funded position (30 hours per week), initially fixed-term until 2029-06-30 with a planned total contract term of four years. Salary according to TV-L up to E13 depending on qualifications, including a special annual payment. 30 days of vacation per year plus two additional days off on December 24 and 31.
What's required
A BSc or MSc in bioinformatics is required, with extensive coding experience in Python, Rust, or C/C++. Experience with graphs, sequence variation graphs, and tool building is expected. Specialist knowledge and hands-on expertise in metagenomics, genomics, viruses, or bacteriophages is beneficial. Strong motivation, excellent organisational skills, and the ability to work collaboratively in a cross-disciplinary research group are required. Excellent written and spoken English is required; fluency in German and other languages is advantageous.
How to apply
Apply online by 19 October 2026 using the university's online application form. Check the applicant data privacy information before submitting.
More information can be found here
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