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CNRS

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PhD in Comparative Regulatory Genomics and Evolutionary Origins of Exonic Enhancers CNRS in France

Degree Level

PhD

Field of study

Computer Science

Funding

PhD position funded under the ANR EXONHANCER program. The post is a full-time temporary doctoral contract; no stipend amount is stated. The page also notes it is not funded by an EU research framework programme.

Deadline

Oct 8, 2026

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Country

France

University

CNRS

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Keywords

Computer Science
Evolutionary Biology
Environmental Science
Biology
Statistical Analysis
Genomic
Statistics
Bioinformatic
Regulatory Genomics

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About this position

PhD position in comparative regulatory genomics at CNRS, based at the Laboratory for Biometry and Evolutionary Biology (LBBE) in Lyon/Villeurbanne, France, with supervision by Anamaria Necsulea (LBBE, Lyon) and Benoît Ballester (TAGC, Marseille).

The project, funded under the ANR EXONHANCER program, focuses on the evolutionary origins and trajectories of exonic enhancers across vertebrate species. The research asks how coding and regulatory constraints jointly shape the evolution of exonic enhancer sequences, using genome annotations, whole-genome alignments, orthology inference, reproducible bioinformatics workflows, statistical analyses, and visualization of large-scale genomic datasets.

This is a full-time, temporary PhD opening in a highly computational project. The post is especially relevant for candidates interested in bioinformatics, genomics, evolutionary biology, molecular evolution, phylogenetics, population genomics, transcriptomics, and regulatory genomics.

Eligibility highlights: a Master's degree or equivalent in bioinformatics, computational biology, genomics, evolutionary biology, or a related field; experience with genomic data analysis; proficiency in Python and/or R; Linux/Unix command-line skills; and a solid foundation in statistics. English communication is required, and basic French is listed. Experience with comparative genomics, HPC, Snakemake/Nextflow, Git, or related data formats is an advantage.

Funding: the position is funded through ANR EXONHANCER; no stipend amount is stated in the post. The page notes the role is not funded by an EU research framework programme.

Location: Villeurbanne/Lyon, France. Deadline: 8 October 2026, 23:59 UTC.

Apply via the CNRS vacancy page and review the Euraxess listing if needed for additional details.

Funding details

PhD position funded under the ANR EXONHANCER program. The post is a full-time temporary doctoral contract; no stipend amount is stated. The page also notes it is not funded by an EU research framework programme.

What's required

Master's degree or equivalent in bioinformatics, computational biology, genomics, evolutionary biology or a related discipline. Essential skills include experience with genomic data analysis, proficiency in Python and/or R, familiarity with the Linux/Unix command line, and a solid foundation in statistics. Candidates should be able to work independently and collaboratively and communicate scientific results effectively in English. Experience in comparative genomics, molecular evolution, phylogenetics, population genomics or transcriptomics is an advantage; familiarity with genomic data formats, high-performance computing, workflow managers such as Snakemake or Nextflow, and Git is also valuable. Basic French is listed.

How to apply

Apply through the CNRS job portal using the provided application page. The post also links to the Euraxess listing for viewing or applying. Check the CNRS vacancy page for the full application instructions and submit before the deadline.

More information can be found here

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