Shannara Taylor Parkins

Technical University of Denmark
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Denmark

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Articles (5)

Shu: visualization of high-dimensional biological pathways

Summary Shu is a visualization tool that integrates diverse data types into a metabolic map, with a focus on supporting multiple conditions and visualizing distributions. The goal is to provide a unified platform for handling the growing volume of multi-omics data, leveraging the metabolic maps developed by the metabolic modeling community. In addition, shu offers a streamlined python API, based on the Grammar of Graphics, for easy integration with data pipelines. Availability and implementation Freely available at https://github.com/biosustain/shu under MIT/Apache 2.0 license. Binaries are available in the release page of the repository and the web application is deployed at https://biosustain.github.io/shu.

Year:

2024

Collaborators (6)

Milou Arts

Royal Netherlands Institute for Sea Research

NETHERLANDS

Swathi Murthy

Assistant Professor

University of Copenhagen

DENMARK

Pascale Daran-Lapujade

Full Professor

Delft University of Technology

NETHERLANDS

Pablo Ivan Nikel

Technical University of Denmark

DENMARK

Lars Keld Nielsen

University of Queensland

AUSTRALIA

Jean-Marc G. Daran

Delft University of Technology

NETHERLANDS
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