Publisher
source

University of Newcastle

AgriFutures Australia PhD Scholarship

PhD in Computational Genomics and Equine Immunology The University of Newcastle in Australia

Degree Level

PhD

Field of study

Immunology

Funding

Living allowance scholarship of $38,938 per annum (2026 rate), indexed annually, funded by AgriFutures Australia. The PhD scholarship includes tuition fee scholarship and living allowance for 3.5 years.

Deadline

Nov 10, 2026

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Country

Australia

University

University of Newcastle

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Keywords

Immunology
Computer Science
Biology
Python Programming
Medical Science
High Performance Computing
Genomic
Statistics
Bioinformatic
Transcriptomic

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About this position

PhD opportunity at The University of Newcastle, Australia in computational genomics, equine genomics, and equine immunology. The project investigates equine health and immune biology using genomic, transcriptomic, and immune-repertoire sequencing data, with a strong emphasis on computational analysis, genome assembly/annotation, comparative genomics, and reproducible bioinformatics workflows.

This is a PhD scholarship supported by AgriFutures Australia. Funding includes a living allowance of $38,938 per annum (2026 rate), indexed annually, plus a tuition fee scholarship for 3.5 years.

The position is supervised by Dr Aleona Swegen. The opportunity is strictly limited to domestic students only, including Australian citizens, Australian permanent residents, Australian humanitarian visa holders, and eligible New Zealand citizens. International students and temporary visa holders are not eligible.

Applicants should have research experience in bioinformatics or computational genomics, with skills in genome assembly analysis, annotation of complex/repetitive genomic regions, immune-receptor or V(D)J repertoire sequencing, FASTQ/BAM analysis, comparative genomics, germline gene discovery, Python and/or R, Linux/HPC, and workflow tools such as Nextflow or Snakemake. Experience with single-cell sequencing, immunogenomics, non-model organisms, incomplete genome annotations, and tools like IgBLAST, MiXCR, TRUST4, IgDiscover, or partis is desirable.

To apply, email a CV and a one-page cover letter addressing the essential expertise and eligibility requirements to [email protected]. The expression of interest is due by 5pm on 10 November 2026. The opportunity is subject to grant establishment.

Funding details

Living allowance scholarship of $38,938 per annum (2026 rate), indexed annually, funded by AgriFutures Australia. The PhD scholarship includes tuition fee scholarship and living allowance for 3.5 years.

What's required

Applicants must meet the minimum eligibility criteria for PhD admission and be domestic students only: Australian citizens, Australian permanent residents, Australian humanitarian visa holders, or eligible New Zealand citizens. Required or strongly preferred experience includes bioinformatics or computational genomics research, genome assembly analysis and annotation of complex or repetitive regions, immune-receptor or V(D)J repertoire sequencing analysis, FASTQ/BAM and reference genome data analysis, comparative genomics and/or germline gene discovery, strong Python and/or R programming, Linux/HPC experience, and reproducible workflows using Nextflow, Snakemake or equivalent. Experience with single-cell sequencing, immunogenomics, non-model organisms, incomplete genome annotations, complex immune loci, and tools such as IgBLAST, MiXCR, TRUST4, IgDiscover, or partis is advantageous.

How to apply

Email a CV and a one-page cover letter addressing the essential expertise and eligibility requirements to [email protected]. Send the expression of interest by 5pm on 10 November 2026.

More information can be found here

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