Technical University of Denmark
6 days ago
PhD scholarship
PhD scholarship in Antifungal Resistance at the Food–Environment Interface Technical University of Denmark in Denmark
Degree Level
PhD
Field of study
Computer Science
Funding
PhD scholarship at DTU National Food Institute; employment period is 3 years, full-time, with salary and appointment terms based on the Danish collective agreement. The post is a scholarship-funded PhD position rather than a self-funded study place.
Deadline
Oct 21, 2026
Country
Denmark
University
Technical University of Denmark
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About this position
PhD scholarship in Antifungal Resistance at the Food–Environment Interface at the DTU National Food Institute, Technical University of Denmark, in Kgs. Lyngby, Denmark.
This PhD project sits at the intersection of microbiology, fungal genomics, bioinformatics, machine learning, statistics, quantitative risk assessment, and public health. The project investigates how antifungal-resistant fungi occur and spread across food-production environments, how resistance emerges at the food–environment interface, and how surveillance data can be translated into estimates of human exposure and public-health impact.
You will work across wet-lab and dry-lab activities: collecting samples, isolating and characterising fungi, performing antifungal susceptibility testing, generating and analysing whole-genome sequencing data, analysing metagenomic and other microbial datasets, and applying statistical and machine-learning approaches to genotype–phenotype relationships and resistance prediction. The project also contributes to probabilistic exposure and risk-assessment models and One Health surveillance thinking.
The position is based in the Research Group for Global Capacity Building and involves close collaboration with the Research Group for Risk-Benefit. Supervision is provided by Joana Mourão (main supervisor), Sara Monteiro Pires (Senior Researcher), and René S. Hendriksen (Professor).
Applicants should hold a two-year master’s degree (120 ECTS) or equivalent in microbiology, molecular biology, biotechnology, bioinformatics, computational biology, or a related field. Required experience includes bioinformatics and sequence analysis, Linux/command-line computing, scripting or statistical programming in Python or R, some hands-on microbiology lab experience, basic experimental design, and good English. Experience with fungal microbiology, antifungal susceptibility testing, whole-genome sequencing, metagenomics, microbial genomics, machine learning, or quantitative risk assessment is an advantage.
This is a 3-year full-time PhD scholarship with salary and appointment terms according to the Danish collective agreement. The application deadline is 2026-10-21. Apply online with a single PDF containing your cover letter, CV, transcripts, diploma, and publication list if applicable.
Funding details
PhD scholarship at DTU National Food Institute; employment period is 3 years, full-time, with salary and appointment terms based on the Danish collective agreement. The post is a scholarship-funded PhD position rather than a self-funded study place.
What's required
Applicants must have a two-year master's degree (120 ECTS) or equivalent in microbiology, molecular biology, biotechnology, bioinformatics, computational biology, or a related field. Required experience includes bioinformatics and sequence analysis, command-line computing (e.g. Linux), scripting or statistical programming in Python or R, some hands-on microbiological laboratory work, understanding of experimental design and basic statistical analysis, and good written and spoken English. Experience with fungal microbiology, antifungal susceptibility testing, whole-genome sequencing, metagenomics, microbial genomics, machine learning, or quantitative risk assessment is an advantage. The cover letter should describe both laboratory and computational experience and interest in combining them.
How to apply
Apply online through the DTU career portal by submitting one PDF with a cover letter, CV, grade transcripts, BSc/MSc diploma, and publication list if applicable. Submit before the deadline and ensure all materials are in English. You may apply before receiving the master's degree, but you cannot start before it is awarded.
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