University of Amsterdam
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PhD in Explainable Machine Learning for Single-Cell Biology University of Amsterdam in Netherlands
Degree Level
PhD
Field of study
Computer Science
Funding
Temporary PhD employment for 4 years at 38 hours per week, with an initial 18-month contract and extension after satisfactory evaluation. Salary ranges from €3,204 gross per month in year 1 to €4,051 gross per month in the final year, excluding 8% holiday pay and 8.3% end-of-year bonus. A 30% ruling may apply to non-Dutch applicants. Additional benefits include pension, courses, and housing support for a studio or small apartment when moving from abroad.
Deadline
Oct 13, 2026
Country
Netherlands
University
University of Amsterdam
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About this position
PhD candidate in explainable machine learning for studying biology at single-cell resolution at the University of Amsterdam (Netherlands).
This PhD project sits at the interface of computer science, mathematics, and biology, with a strong focus on machine learning, explainable AI, single-cell omics, and bioinformatics. The successful candidate will join the Biosystems Data Analysis group at the Swammerdam Institute for Life Sciences, working on interpretable-by-design models for analyzing single-cell (multi)-omics data and incorporating biological knowledge into ML methods to accelerate biological discovery.
The role includes developing novel algorithms, designing in silico experiments, collaborating with an interdisciplinary and internationally oriented team, writing manuscripts, attending the University of Amsterdam PhD training programme, and assisting with teaching and supervision of Bachelor’s and Master’s students.
Eligibility highlights: MSc in Bioinformatics, Artificial Intelligence, Data Science, Biostatistics, or a closely related field; solid experience with machine learning/deep learning (preferably Python); basic biology knowledge or strong interest in computational biology; fluent English. Experience with single-cell transcriptomics and HPC is a plus.
Funding and conditions: This is a paid PhD employment position for 4 years, 38 hours/week. Salary ranges from €3,204 to €4,051 gross per month, plus holiday pay and end-of-year bonus. The post also mentions pension, training opportunities, Dutch language courses, and housing support for applicants moving from abroad.
Deadline: 13 October 2026. Apply online via AcademicTransfer and include a CV, motivation letter, and two references.
Funding details
Temporary PhD employment for 4 years at 38 hours per week, with an initial 18-month contract and extension after satisfactory evaluation. Salary ranges from €3,204 gross per month in year 1 to €4,051 gross per month in the final year, excluding 8% holiday pay and 8.3% end-of-year bonus. A 30% ruling may apply to non-Dutch applicants. Additional benefits include pension, courses, and housing support for a studio or small apartment when moving from abroad.
What's required
Applicants should hold an MSc in Bioinformatics, Artificial Intelligence, Data Science, Biostatistics, or a closely related discipline. They should have demonstrable experience training machine learning and deep learning models, preferably in Python, and a basic understanding of biology or a strong interest in using computational methods to study biology. Fluency in English, written and spoken, is required. Experience with single-cell transcriptomics analysis and high-performance computing is considered a plus.
How to apply
Apply online via the red apply button on the AcademicTransfer page. Submit a detailed CV with months of education and work experience, a motivation letter, and the names and email addresses of two references in one single PDF file besides the CV. Applications are accepted until 13 October 2026.
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