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University of Basel

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PhD Position in Generative Modeling of Human Development and Disease University of Basel in Switzerland

Degree Level

PhD

Field of study

Computer Science

Funding

Available

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Country

Switzerland

University

University of Basel

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Keywords

Computer Science
Biomedical Engineering
Biology
Computational Biology
Cytoskeleton Dynamics
Generative Modeling
Statistics
Bioinformatic

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About this position

PhD position at the University of Basel, Switzerland, in generative modeling for human development and disease. The project focuses on computational biology and bioinformatics methods for single-cell genomics and spatial genomics data from sequencing and imaging.

Research directions include: cell–cell communication modeling beyond ligand–receptor analysis; joint models of regulation and dynamics using flow-based and diffusion-based approaches; and intervention design plus continual learning for lab-in-the-loop biological modeling. The work builds on tools and prior work such as scVelo, CellRank, CellRank 2, moslin, moscot, and RegVelo, and involves collaboration with hospitals, universities, and institutes in Basel.

Required background: an MSc in computer science, mathematics, physics, engineering, computational biology, or a related quantitative field; hands-on experience with biological data; strong Python skills; experience with PyTorch or JAX; statistical grounding; a GitHub account with code; and fluent English. Desirable experience includes single-cell or spatial genomics and open-source scientific software contributions.

This is a PhD opening, not a scholarship. Apply via the official University of Basel vacancy page linked in the post.

Funding details

Available

What's required

MSc in computer science, mathematics, physics, engineering, computational biology, or a related quantitative field. Hands-on experience with biological data is required, along with strong Python skills and experience with PyTorch or JAX, statistical grounding to reason about the models used, a GitHub account with code written by the applicant, and fluent English. Desirable: experience with single-cell or spatial genomics data and contributions to open-source scientific software.

How to apply

Click the View or Apply link to open the University of Basel job posting and submit an application through the official portal. Review the full vacancy page for any additional documents or instructions before applying.

More information can be found here

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