Publisher
source

Amsterdam UMC

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PhD position in microbiome, diarrhea, and antimicrobial resistance Amsterdam UMC in Netherlands

Degree Level

PhD

Field of study

Computer Science

Funding

Full funding available

Deadline

Sep 1, 2026

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Country

Netherlands

University

Amsterdam UMC

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Keywords

Computer Science
Environmental Science
Information Technology
Biology
Infectious Disease
Antibiotic Resistance
Global Health
Medical Science
Agent-based Modeling
Salud Pública
Microbiome Research
Statistics
Bioinformatic

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About this position

PhD position in microbiome science, diarrheal disease, and antimicrobial resistance at Amsterdam UMC

This PhD project at Amsterdam UMC focuses on how the gut microbiome, especially E. coli carriage, influences the risk of diarrheal disease and antimicrobial resistance (AMR) in infants in low- and middle-income countries (LMIC). The work is based in the Department of Global Health and embedded in the Amsterdam Institute for Immunology and Infectious Diseases (AI&I), with collaborations in Zambia, Ghana, and Kenya.

The project combines microbiology, microbiome research, bioinformatics, statistics, computational modeling, and global health. The PhD student will analyze existing datasets to identify bacterial, host, and environmental determinants of E. coli carriage, diarrheal infections, and ARG carriage; support clinical studies in Kenya and Zambia; and use agent-based modeling to simulate colonization resistance and ARG transmission dynamics.

Applicants should have a strong interest in microbiome and AMR research, with supportive expertise in metagenomics or microbial genomics, quantitative analysis, R and/or Python, and bioinformatics workflows. Experience or interest in international clinical research is valuable. The role emphasizes interdisciplinary teamwork, independent research, and clear scientific communication.

This is a 4-year PhD position with an initial 12-month contract and the intention to extend. Salary is €3,217 to €4,077 gross per month for full-time employment, plus an 8.3% end-of-year bonus. Additional benefits include travel reimbursement, a bike scheme, and pension accrual.

Deadline: 1 September 2026. Applications are handled continuously and may close early if the vacancy is filled.

How to apply: Use the Apply now button on the vacancy page. For questions about the position, contact Dr. Vanessa Harris at [email protected].

Funding details

Full funding including tuition fees and living expenses is available for this position. The scholarship covers all educational costs and provides a monthly stipend.

How to apply

Please submit your application including a cover letter, CV, academic transcripts, and contact information for two references. Applications should be sent via the online portal before the deadline.

More information can be found here

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