Alexander Pak

Assistant Professor

Colorado School of Mines

United States

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Alexander Pak is an Assistant Professor at the Colorado School of Mines in the United States. His research focuses on self-assembly mechanisms of nanostructures, structural biology of microbial layers, and protein interactions. Recent publications include work on HIV-1 viral capsid assembly, SARS-CoV-2 fusion mechanisms, and innovative coarse-grained models for water. He integrates computational methods such as molecular dynamics and machine learning to enhance understanding of complex biological systems.

Articles (9)

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2025

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2024

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2024

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2024

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2023

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2022

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2021

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2021

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2021

Collaborators (2)

Han Remaut

Vrije Universiteit Brussel

BELGIUM

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Zunlong Ke

Assistant Professor

University of Texas at Austin

UNITED STATES

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Alexander Pak

Research Interests

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About

Articles (9)

Deciphering Self-Assembly Mechanisms of IRMOF-n-Inspired Three-Dimensional Cubic-Symmetry Nanoporous Crystals from Multiscale Simulations

Architecture of the Sap S-layer of Bacillus anthracis revealed by integrative structural biology

Molecular dynamics and machine learning stratify motion-dependent activity profiles of S-layer destabilizing nanobodies

Formalizing Coarse-Grained Representations of Anisotropic Interactions at Multimeric Protein Interfaces Using Virtual Sites

Critical mechanistic features of HIV-1 viral capsid assembly

Cooperative multivalent receptor binding promotes exposure of the SARS-CoV-2 fusion machinery core

A new one-site coarse-grained model for water: Bottom-up many-body projected water (BUMPer). I. General theory and model

A new one-site coarse-grained model for water: Bottom-up many-body projected water (BUMPer). II. Temperature transferability and structural properties at low temperature

Immature HIV-1 assembles from Gag dimers leaving partial hexamers at lattice edges as potential substrates for proteolytic maturation

Collaborators (2)

Han Remaut

Zunlong Ke

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