alexandre marand

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Assistant Professor

University of Michigan

United States

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About

Dr. Alexandre Marand is an Assistant Professor at the University of Michigan, USA. His research focuses on the genetic and epigenetic mechanisms underlying plant development and adaptation, with recent publications addressing cis-regulatory evolution, photosynthesis mechanisms in grasses, and the use of deep learning for genomic analysis. His work leverages single-cell technologies to explore complex traits in plants, emphasizing the importance of chromatin interactions and regulatory elements.

Recent Grants

Grant: Close

Exploration of cis-regulatory diversity underlying phenotypic innovation

Open Date: 2022-03-01

Close Date: 2023-06-30

Grant: Close

NSF Postdoctoral Fellowship in Biology FY 2019: Deconvolution of cis-regulatory variation underlying kernel development in maize

Open Date: 2019-07-01

Close Date: 2022-06-30

Articles (13)

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2025

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2025

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2024

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2024

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2023

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2023

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2022

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2022

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2022

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2022

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2021

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2021

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2021

Collaborators (20)

Xuehua Zhong

Professor

Washington University in St. Louis

UNITED STATES

alexandre marand

Research Interests

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About

Recent Grants

Articles (13)

The genetic architecture of cell type–specific cis regulation in maize

A single-cell rice atlas integrates multi-species data to reveal cis-regulatory evolution

Investigating the cis- regulatory basis of C 3 and C 4 photosynthesis in grasses at single-cell resolution

GenomicLinks: deep learning predictions of 3D chromatin interactions in the maize genome

Leveraging Single-Cell Populations to Uncover the Genetic Basis of Complex Traits.

<i>cis</i>-Regulatory Elements in Plant Development, Adaptation, and Evolution.

Modeling chromatin state from sequence across angiosperms using recurrent convolutional neural networks

Quality control and evaluation of plant epigenomics data

A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells.

Single-cell analysis of cis-regulatory elements

Vision, challenges and opportunities for a Plant Cell Atlas

Leveraging histone modifications to improve genome annotations

De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes.

Collaborators (20)

Xuehua Zhong

Shao-shan Carol Huang

Peter Crisp

Gazala Ameen

Sakil Mahmud

Clay Wright

Ziliang Luo

Edward Buckler

F. Johannes

Franziska Turck

Amir H. Ahkami

Rebecca Mosher

Mark Minow

Suryatapa Jha

Siobhan Brady

R Glen Uhrig

Nathan M Springer

Jianing Liu

Robert J. Schmitz

Shyam Solanki

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