Atsuya Nishiyama

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Associate Professor

Tokyo Metropolitan Institute of Medical Science

Japan

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About

Atsuya Nishiyama is an Associate Professor at The Institute of Medical Science, The University of Tokyo, Japan. His research focuses on structural biology, particularly the mechanisms of DNA methylation and the role of various proteins in epigenetic regulation. Recent articles by Professor Nishiyama explore the structural features of DNA maintenance methyltransferases and the interactions of key proteins involved in DNA signaling pathways.

Recent Grants

Grant: Close

5-aza-dCTPによる新たなDNA維持メチル化制御機構の解明

Open Date: 2021-04-01

Close Date: 2023-03-31

Grant: Close

ケモテクノロジーで探るDNAメチル化部位特異的なユビキチンシグナル機能とその制御

Open Date: 2019-06-28

Close Date: 2021-03-31

Grant: Close

DNAメチル化を介したゲノム安定性制御の分子メカニズム

Open Date: 2019-04-01

Close Date: 2023-03-31

Grant: Close

複製因子の翻訳後修飾が制御する新しいDNAメチル化継承機構の構造基盤

Open Date: 2018-04-01

Close Date: 2021-03-31

Grant: Close

Molecular basis of maintenance DNA methylation

Open Date: 2016-04-01

Close Date: 2020-03-31

Articles (13)

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2025

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2024

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2024

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2022

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2022

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2021

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2021

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2021

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2020

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2020

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2020

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2020

Collaborators (17)

Hiroki R. Ueda

University of Tokyo

JAPAN

Atsuya Nishiyama

Research Interests

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About

Recent Grants

Articles (13)

Cryo-EM reveals evolutionarily conserved and distinct structural features of plant CG maintenance methyltransferase MET1

Structure of human DPPA3 bound to the UHRF1 PHD finger reveals its functional and structural differences from mouse DPPA3

CDCA7 is an evolutionarily conserved hemimethylated DNA sensor in eukaryotes

The termination of UHRF1-dependent PAF15 ubiquitin signaling is regulated by USP7 and ATAD5

Structural basis for the unique multifaceted interaction of DPPA3 with the UHRF1 PHD finger.

Structural basis for activation of DNMT1.

Structure-based screening combined with computational and biochemical analyses identified the inhibitor targeting the binding of DNA Ligase 1 to UHRF1.

Navigating the DNA methylation landscape of cancer

HPF1-dependent PARP activation promotes LIG3-XRCC1-mediated backup pathway of Okazaki fragment ligation

Generation of a p16 Reporter Mouse and Its Use to Characterize and Target p16<sup>high</sup> Cells In Vivo

Author Correction: Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive DNA demethylation in mammals

Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive DNA demethylation in mammals

Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation.

Collaborators (17)

Hiroki R. Ueda

Tsuyoshi Konuma

Taketomo Kido

Ryohei Nakamura

Franziska Traube

Takahisa Ikegami

Naruhiko Adachi

Li Zhao

Masaaki Oyama

Satoshi Ueha

Kosuke Yamaguchi

Miha Modic

Takeharu Sakamoto

Etsuo Susaki

Soichiro Kumamoto

Hiroki Onoda

Kyohei Arita

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