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Can Ergen

Group Leader

Helmholtz Zentrum München Deutsches Forschungszentrum für Umwelt und Gesundheit

Germany

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Articles (16)

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2026

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2026

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2026

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2025

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2025

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2025

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2025

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2025

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2025

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2025

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2024

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2024

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2024

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2023

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2023

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2023

Collaborators (16)

Julio Saez-Rodriguez

GERMANY

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Ellen Robey

Professor

University of California, Berkeley

UNITED STATES

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Luke Koblan

Whitehead Institute for Biomedical Research

UNITED STATES

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Jonathan Weissman

Whitehead Institute for Biomedical Research

UNITED STATES

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Bastian Rieck

Full Professor

University of Fribourg

SWITZERLAND

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José L. McFaline-Figueroa

Assistant Professor

Columbia University

UNITED STATES

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Justin Hong

Columbia University

UNITED STATES

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Samuel Huber

Director

University Medical Center Hamburg-Eppendorf

GERMANY

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Su-In Lee

Boeing Endowed Professor

University of Washington

UNITED STATES

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Joanne Jones

Associate Professor/Group Leader/Honorary Consultant Neurologist

University of Cambridge

UNITED KINGDOM

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Thomas Connors

Columbia University Irving Medical Center

UNITED STATES

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Stefan Bonn

Professor, Institute Director

GERMANY

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Malte D Luecken

Principal Investigator

Helmholtz Zentrum München Deutsches Forschungszentrum für Umwelt und Gesundheit

GERMANY

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Daniel Caron

Columbia University

UNITED STATES

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Allon Wagner

University of California, Berkeley

UNITED STATES

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Michael Jordan

Professor

University of California, Berkeley

UNITED STATES

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Articles (16)

Probabilistic modelling of single-cell bisulfite sequencing data with MethylVI

CytoVI: deep generative modeling of antibody-based single cell data

ResolVI: addressing noise and bias in spatial transcriptomics

High-resolution spatial mapping of cell state and lineage dynamics in vivo with PEtracer

Multimodal profiling reveals tissue-directed signatures of human immune cells altered with age

Defining and benchmarking open problems in single-cell analysis.

Deep generative modeling of sample-level heterogeneity in single-cell genomics

Scvi-hub: an actionable repository for model-driven single-cell analysis

BioContextAI is a community hub for agentic biomedical systems

ZEB2 is a master switch controlling the tumor-associated macrophage program

Human γδ T cells in diverse tissues exhibit site-specific maturation dynamics across the life span

Consensus prediction of cell type labels in single-cell data with popV

VI-VS: calibrated identification of feature dependencies in single-cell multiomics

DISCERN: deep single-cell expression reconstruction for improved cell clustering and cell subtype and state detection

Single-cell multiomic analysis of thymocyte development reveals drivers of CD4+ T cell and CD8+ T cell lineage commitment

Tr1 Cells Emerge and Suppress Effector Th17 Cells in Glomerulonephritis

Collaborators (16)

Julio Saez-Rodriguez

Ellen Robey

Luke Koblan

Jonathan Weissman

Bastian Rieck

José L. McFaline-Figueroa

Justin Hong

Samuel Huber

Su-In Lee

Joanne Jones

Thomas Connors

Stefan Bonn

Malte D Luecken

Daniel Caron

Allon Wagner

Michael Jordan

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