Christopher Faulk

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University of Minnesota

United States

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The Environment and Epigenome: Interplay of Toxicants and Transposons in Mammals

Open Date: 2013-09-01

Close Date: 2015-08-31

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Collaborators (13)

Laura J. Niedernhofer

UNITED STATES

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Dejan Budimirovic

Associate Professor

Johns Hopkins University

UNITED STATES

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Joseph Palumbo

Member, Dean's Council of Advisors

The George Washington University School of Medicine and Health SCiences

UNITED STATES

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Lee J. Johnston

University of Minnesota

UNITED STATES

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Daniel Gallaher

University of Minnesota

UNITED STATES

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Beth Thielen

University of Minnesota

UNITED STATES

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Peter Larsen

Assistant Professor

University of Minnesota

UNITED STATES

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Zachary Laubach

University of Colorado Boulder

UNITED STATES

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Arthur Ribeiro

University of Minnesota

UNITED STATES

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Nicole Flack

University of Minnesota

UNITED STATES

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Wilson Chung

Associate Professor

Kent State University

UNITED STATES

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Marjorie Oleksiak

UNITED STATES

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Douglas Crawford

Professor

University of Miami

UNITED STATES

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Christopher Faulk

Research Interests

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Recent Grants

Articles (24)

De novo whole-genome assembly of the critically endangered southern muriqui (Brachyteles arachnoides).

The genome of the American dog tick (Dermacentor variabilis)

Utilization of Oxford Nanopore Technology for human infectious disease detection and surveillance in Africa: a scoping review

Reprint of

The genome sequence and genomic diversity of soybean tentiform leafminer (Macrosaccus morrisella)

Sequencing and assembling the genome of Przewalski's horse in the classroom

The Genome of the American Dog Tick ( Dermacentor variabilis).

Whole Genome Sequencing Reveals Clade-Specific Genetic Variation in Blacklegged Ticks

Epigenotoxicity: Decoding the epigenetic imprints of genotoxic agents and their implications for regulatory genetic toxicology

Rapid molecular species identification of mammalian scat samples using nanopore adaptive sampling

piOxi database: a web resource of germline and somatic tissue piRNAs identified by chemical oxidation

Role of the endocannabinoid system in fragile X syndrome: potential mechanisms for benefit from cannabidiol treatment.

Genome skimming with nanopore sequencing precisely determines global and transposon DNA methylation in vertebrates

Chromosome-level, nanopore-only genome and allele-specific DNA methylation of Pallas's cat, Otocolobus manul

Allergen-induced DNA release by the airway epithelium amplifies type 2 immunity

De novo sequencing, diploid assembly, and annotation of the black carpenter ant, Camponotus pennsylvanicus, and its symbionts by one person for $1000, using nanopore sequencing

Evaluation of Feeding Beta-Hydroxy-Beta-Methylbutyrate (HMB) to Mouse Dams during Gestation on Birth Weight and Growth Variation of Offspring

Metagenomic surveillance for bacterial tick-borne pathogens using nanopore adaptive sampling.

Nanopore adaptive sampling for targeted mitochondrial genome sequencing and bloodmeal identification in hematophagous insects.

The genome of the soybean gall midge (Resseliella maxima)

Sequencing Bait: Nuclear and Mitogenome Assembly of an Abundant Coastal Tropical and Subtropical Fish, Atherinomorus stipes

Epigenetics, DNA damage, and aging

Developmental cannabidiol exposure increases anxiety and modifies genome-wide brain DNA methylation in adult female mice.

Early-life social experience affects offspring DNA methylation and later life stress phenotype

Collaborators (13)

Laura J. Niedernhofer

Dejan Budimirovic

Joseph Palumbo

Lee J. Johnston

Daniel Gallaher

Beth Thielen

Peter Larsen

Zachary Laubach

Arthur Ribeiro

Nicole Flack

Wilson Chung

Marjorie Oleksiak

Douglas Crawford

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