David Cook

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Associate Professor

University of Kansas

United States

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About

David Cook is an Associate Professor at Kansas State University, USA. His research focuses on machine learning applications in plant disease detection, genomic diversity in plant-fungal interactions, and CRISPR technologies in gene editing. Recent publications highlight his work on transcriptional predictors for plant diseases, genome evolution in fungal pathogens, and dynamic genomic mechanisms affecting agricultural health.

Recent Grants

Grant: Close

Dynamic mini-chromosomes: mechanisms of exchange, stability and causation of fungal pathogen adaptation

Open Date: 2021-07-01

Close Date: 2025-06-30

Grant: Close

Collaborative Research: MODULUS: A Novel Spatiotemporal Multifractal Analysis to Evaluate Genome Dynamics

Open Date: 2019-08-15

Close Date: 2022-07-31

Grant: Close

Deciphering the Control Network and Genome Dynamics During Fungal Plant Pathogenesis

Open Date: 2018-09-01

Close Date: 2021-08-31

Grant: Close

Genetic and epigenetic changes contributing to host-pathogen coadaptation

Open Date: 2014-05-01

Close Date: 2017-04-30

Articles (16)

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2025

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2024

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2024

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2024

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2023

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2023

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2022

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2022

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2022

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2022

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2022

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2021

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2021

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2021

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2020

Collaborators (4)

Michael F Seidl

Associate Professor

Utrecht University

NETHERLANDS

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Geoffrey Preston Morris

Associate Professor

Colorado State University

UNITED STATES

View details

Paul Bogdan

Assistant Professor

University of Southern California

UNITED STATES

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Bart Thomma

Alexander von Humboldt professor of Evolutionary Microbiology

University of Cologne

GERMANY

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David Cook

Research Interests

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About

Recent Grants

Articles (16)

Machine learning‐based identification of general transcriptional predictors for plant disease

Implications of the three-dimensional chromatin organization for genome evolution in a fungal plant pathogen

Using recurrent neural networks to detect supernumerary chromosomes in fungal strains causing blast diseases

Rapid mini-chromosome divergence among fungal isolates causing wheat blast outbreaks in Bangladesh and Zambia

Epigenetic regulation of nuclear processes in fungal plant pathogens

Dynamic Genomes - Mechanisms and consequences of genomic diversity impacting plant-fungal interactions

Local Rather than Global H3K27me3 Dynamics Are Associated with Differential Gene Expression in Verticillium dahliae

CRISPR guides induce gene silencing in plants in the absence of Cas

CRISPR-Cas12a induced DNA double-strand breaks are repaired by multiple pathways with different mutation profiles in Magnaporthe oryzae

The contribution of DNA repair pathways to genome editing and evolution in filamentous pathogens

CRISPR-Cas12a ribonucleoprotein-mediated gene editing in the plant pathogenic fungus Magnaporthe oryzae

Inferring functional communities from partially observed biological networks exploiting geometric topology and side information

Histone modification dynamics at H3K27 are associated with altered transcription of in planta induced genes in Magnaporthe oryzae

Histone modification dynamics at H3K27 are associated with altered transcription of in planta induced genes in Magnaporthe oryzae

Three putative DNA methyltransferases of Verticillium dahliae differentially contribute to DNA methylation that is dispensable for growth, development and virulence

A unique chromatin profile defines adaptive genomic regions in a fungal plant pathogen

Collaborators (4)

Michael F Seidl

Geoffrey Preston Morris

Paul Bogdan

Bart Thomma

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