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David Degnan

Assistant Teaching Professor

University of Oregon

United States

Research Interests

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Professors in United States Professors in Biochemistry Biochemistry professors in United States

Articles (20)

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2026

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2026

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2026

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2026

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2026

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2025

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2025

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2025

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2024

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2024

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2024

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2024

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2023

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2023

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2023

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2023

Collaborators (11)

Tri Nguyen

Research Scientist

Stanford University

UNITED STATES

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Raymond Harris

Professor , Director of Research and Associate Program Director, Division of Nephrology

Vanderbilt University Medical Center

UNITED STATES

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James Fulcher

Staff Scientist

Pacific Northwest National Laboratory

UNITED STATES

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Alessia Angelin

Assistant Professor

University of Rome Tor Vergata

ITALY

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Mowei Zhou

Qiushi Scholar for Experiments

Zhejiang University

CHINA

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Shuoshuo Wang

Scientific Director - Staff Scientist

Beth Israel Deaconess Medical Center

UNITED STATES

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Lee Ann McCue

Senior Research Scientist

Pacific Northwest National Laboratory

UNITED STATES

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James Pesavento

Associate Professor

Saint Mary's College of California

UNITED STATES

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Javier Flores

Research Assistant Professor

The University of Iowa

UNITED STATES

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Elizabeth A. Shank

Associate Professor

University of Massachusetts Chan Medical School

UNITED STATES

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Katrina Waters

Chief Scientist

Pacific Northwest National Laboratory

UNITED STATES

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David Degnan

Research Interests

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Articles (20)

Characterization of the biofilm landscape of <i>Bacillus subtilis</i> by spatial microproteomics

Consistency of feature attribution in deep learning architectures for multi-omics

Computationally Efficient Bayesian Estimation of Graphical Networks for Omics Data

OmicsMLMentor: A Web Application for Guided Machine Learning Analysis of Omics Data

Unsupervised Semantic Segmentation Models for Region of Interest Identification

Scalable Bayesian Estimation of Multicondition Omics Networks via Clustering and Iterative Merging

bmdrc: Python package for quantifying phenotypes from chemical exposures with benchmark dose modeling

Spatial top-down proteomics for the functional characterization of human kidney

The Power of Many: An Ensemble Approach to Spectral Similarity

DancePartner: Python Package to Mine Multiomics Relationship Networks from Literature and Databases

FREDA: A Web Application for the Processing, Analysis, and Visualization of Fourier‐Transform Mass Spectrometry Data

MODE: A Web Application for Interactive Visualization and Exploration of Omics Data

IsoForma: An R Package for Quantifying and Visualizing Positional Isomers in Top-Down LC-MS/MS Data

PMart Web Application: Marketplace for Interactive Analysis of Panomics Data

Parallel measurement of transcriptomes and proteomes from same single cells using nanodroplet splitting

Protein–Protein Interaction Networks Derived from Classical and Machine Learning-Based Natural Language Processing Tools

Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)

IsoMatchMS: Open-Source Software for Automated Annotation and Visualization of High Resolution MALDI-MS Spectra

Characterizing Families of Spectral Similarity Scores and Their Use Cases for Gas Chromatography–Mass Spectrometry Small Molecule Identification

Expanding the access of wearable silicone wristbands in community-engaged research through best practices in data analysis and integration

Collaborators (11)

Tri Nguyen

Raymond Harris

James Fulcher

Alessia Angelin

Mowei Zhou

Shuoshuo Wang

Lee Ann McCue

James Pesavento

Javier Flores

Elizabeth A. Shank

Katrina Waters

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