David Eyre

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University of Oxford

United Kingdom

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Recent Grants

Grant: Close

Direct from clinical sample gonorrhea sequencing to combat antibiotic resistance

Open Date: 2018-09-01

Close Date: 2019-09-01

Grant: Close

University of Oxford Big Data Institute Robertson Fellowship

Open Date: 2018-03-01

Close Date: 2025-03-01

Grant: Close

Creation of a Healthcare-Associated Infectious Disease Modeling Network to Improve Prevention Research and Healthcare Delivery

Open Date: 2017-08-01

Close Date: 2020-07-01

Grant: Close

Complete bacterial genome sequencing and mathematical modelling to control healthcare-associated infection

Open Date: 2016-08-01

Close Date: 2018-03-01

Grant: Close

Clostridium difficile reservoirs and transmission tracking with nanopore sequencing

Open Date: 2016-08-01

Close Date: 2018-03-01

Articles (17)

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2022

Collaborators (21)

Thomas House

The University of Manchester

UNITED KINGDOM

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sylvia hartl

Head of Institute

AUSTRIA

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Nicole Stoesser

University of Oxford

UNITED KINGDOM

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Emma Pritchard

The University of Manchester

UNITED KINGDOM

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Christian Cole

Academic, Senior Lecturer (Teaching and Research)

University of Dundee

UNITED KINGDOM

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Emily Jefferson

University of Glasgow

UNITED KINGDOM

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Ferry Hagen

University Medical Center Groningen

NETHERLANDS

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Thai Quan

University of Oxford

UNITED KINGDOM

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David Connell

Honorary, Honorary Senior Lecturer

University of Dundee

UNITED KINGDOM

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Philippa Matthews

University College London Hospitals NHS Foundation Trust

UNITED KINGDOM

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Xavier Didelot

Professor

University of Warwick

UNITED KINGDOM

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Erum Masood

University of Dundee

UNITED KINGDOM

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Stephanie Hatch

University of Oxford

UNITED KINGDOM

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Duong Vu

NETHERLANDS

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William Spittal

University of Leeds

UNITED KINGDOM

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Andrew Soltan

University of Oxford

UNITED KINGDOM

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Tanya Golubchik

Senior Lecturer

AUSTRALIA

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Gavin Screaton

Head Medical Sciences Division, Dean of Medicine

University of Oxford

UNITED KINGDOM

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George Joy

University College London

UNITED KINGDOM

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Gillian Rodger

University of Oxford

UNITED KINGDOM

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John Norman Newton

Professor of Public Health and Epidemiology

University of Exeter

UNITED KINGDOM

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David Eyre

Research Interests

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Recent Grants

Articles (17)

Improving the representativeness of UK’s national COVID-19 Infection Survey through spatio-temporal regression and post-stratification

Target enrichment improves culture-independent detection of Neisseria gonorrhoeae and antimicrobial resistance determinants direct from clinical samples with Nanopore sequencing

Algorithmic fairness and bias mitigation for clinical machine learning with deep reinforcement learning

Comparing genomic variant identification protocols for Candida auris

Evaluation of sequence hybridization for respiratory viruses using the Twist Bioscience Respiratory Virus Research panel and the OneCodex Respiratory Virus sequence analysis workflow.

Self-Aware SGD: Reliable Incremental Adaptation Framework for Clinical AI Models

Protection against SARS-CoV-2 Omicron BA.4/5 variant following booster vaccination or breakthrough infection in the UK

Penicillin Binding Protein Substitutions Cooccur with Fluoroquinolone Resistance in Epidemic Lineages of Multidrug-Resistant Clostridioides difficile

An adversarial training framework for mitigating algorithmic biases in clinical machine learning

Performance of antigen lateral flow devices in the UK during the alpha, delta, and omicron waves of the SARS-CoV-2 pandemic: a diagnostic and observational study

A Hybrid Architecture (CO-CONNECT) to Facilitate Rapid Discovery and Access to Data Across the United Kingdom in Response to the COVID-19 Pandemic: Development Study

Benchmarking taxonomic classifiers with Illumina and Nanopore sequence data for clinical metagenomic diagnostic applications

Assessment of an institutional guideline for vancomycin dosing and identification of predictive factors associated with dose and drug trough levels

Increasing test specificity without impairing sensitivity: lessons learned from SARS-CoV-2 serology.

Mortality risks associated with empirical antibiotic activity in Escherichia coli bacteraemia: an analysis of electronic health records.

Omicron-associated changes in SARS-CoV-2 symptoms in the United Kingdom.

Symptoms and Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Positivity in the General Population in the United Kingdom.

Collaborators (21)

Thomas House

sylvia hartl

Nicole Stoesser

Emma Pritchard

Christian Cole

Emily Jefferson

Ferry Hagen

Thai Quan

David Connell

Philippa Matthews

Xavier Didelot

Erum Masood

Stephanie Hatch

Duong Vu

William Spittal

Andrew Soltan

Tanya Golubchik

Gavin Screaton

George Joy

Gillian Rodger

John Norman Newton

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