Eileen Furlong

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Head of department/Unit, Senior scientist

European Molecular Biology Laboratory

Germany

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About

Eileen Furlong is the Head of Department and a Senior Scientist at the European Molecular Biology Laboratory in Germany. Her research focuses on zygotic genome activation, transcription factor binding during embryogenesis, and enhancer-promoter interactions. Recent publications include studies on synthetic enhancers, regulatory element silencing, and single-cell analysis of Drosophila embryonic development. She investigates the specificity of enhancers and their cofactors to enhance understanding of developmental biology.

Recent Grants

Grant: Close

DeCRypT

Open Date: 2019-01-01

Close Date: 2023-12-01

Grant: Close

CisRegVar

Open Date: 2013-09-01

Close Date: 2018-08-01

Articles (12)

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2025

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2025

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2024

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2024

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2024

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2023

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2022

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2022

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2022

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2022

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2022

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2021

Collaborators (7)

Maria Cristina Gambetta

University of Lausanne

SWITZERLAND

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bingqing zhao

Stanford University

UNITED STATES

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Christoph Schaub

Scientific Officer

GERMANY

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Gabriel Rodrigues Cavalheiro

Max Planck Institute of Molecular Cell Biology and Genetics

GERMANY

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Aleksander Jankowski

Assistant Professor

University of Warsaw

POLAND

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Marc Robinson-Rechavi

University of Lausanne

SWITZERLAND

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Judith B. Zaugg

University of Basel

SWITZERLAND

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Eileen Furlong

Research Interests

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About

Recent Grants

Articles (12)

Chip (Ldb1) is a putative cofactor of Zelda forming a functional bridge to CBP during zygotic genome activation

Integrating genetic variation with deep learning provides context for variants impacting transcription factor binding during embryogenesis

Enhancer–promoter interactions become more instructive in the transition from cell-fate specification to tissue differentiation

Targeted design of synthetic enhancers for selected tissues in the Drosophila embryo

In Vivo Silencing of Regulatory Elements Using a Single AAV-CRISPRi Vector

CTCF, BEAF-32, and CP190 are not required for the establishment of TADs in early <i>Drosophila</i> embryos but have locus-specific roles.

The continuum of Drosophila embryonic development at single-cell resolution

Enhancers have more cofactor specificity than we think: A potential new way to classify enhancers based on their functional cofactor requirements.

Regulating specificity in enhancer-promoter communication.

Simultaneous cellular and molecular phenotyping of embryonic mutants using single-cell regulatory trajectories.

scDALI: modeling allelic heterogeneity in single cells reveals context-specific genetic regulation.

The hourglass model of evolutionary conservation during embryogenesis extends to developmental enhancers with signatures of positive selection

Collaborators (7)

Maria Cristina Gambetta

bingqing zhao

Christoph Schaub

Gabriel Rodrigues Cavalheiro

Aleksander Jankowski

Marc Robinson-Rechavi

Judith B. Zaugg

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