Erik van Nimwegen

University of Basel

Switzerland

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Articles (14)

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2025

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2025

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2024

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2024

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2023

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2022

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2022

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2021

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2021

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2021

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2021

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2020

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2020

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2020

Collaborators (12)

Mihaela Zavolan

Professor

University of Basel

SWITZERLAND

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Sepand Rastegar

Inserm (National Institute of Health and Medical Research)

FRANCE

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Fiona Wardle

King’s College London

UNITED KINGDOM

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Dagmar Iber

Associate Professor

ETH-Bereich Hochschulen

SWITZERLAND

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Chirag Nepal

Assistant Professor

Loma Linda University Health

UNITED STATES

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Csilla Varnai

University of Birmingham

UNITED KINGDOM

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Boris Lenhard

Imperial College London

UNITED KINGDOM

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Frank Bruggeman

University of Amsterdam

NETHERLANDS

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Shawn Burgess

National Human Genome Research Institute

UNITED STATES

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Dennis Wang

Professor

Imperial College London

UNITED KINGDOM

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Tim Stearns

Professor and Dean

Rockefeller University

UNITED STATES

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Verdon Taylor

Prof

University of Basel

SWITZERLAND

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Erik van Nimwegen

Research Interests

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Articles (14)

Rapid Transcription Factor Fluctuations Drive Nonequilibrium Gene Regulatory Dynamics in Bacteria

Growth rate controls the sensitivity of gene regulatory circuits

Identifying cell states in single-cell RNA-seq data at statistically maximal resolution

MAPP unravels frequent co-regulation of splicing and polyadenylation by RNA-binding proteins and their dysregulation in cancer

Effective bet-hedging through growth rate dependent stability

Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements

Temporal and sequential transcriptional dynamics define lineage shifts in corticogenesis

Bayesian inference of gene expression states from single-cell RNA-seq data.

Investigate the origins of COVID-19

Genome-wide gene expression noise in Escherichia coli is condition-dependent and determined by propagation of noise through the regulatory network

Whole genome phylogenies reflect the distributions of recombination rates for many bacterial species

Tead transcription factors differentially regulate cortical development

Subpopulations of sensorless bacteria drive fitness in fluctuating environments

Using fluorescence flow cytometry data for single-cell gene expression analysis in bacteria

Collaborators (12)

Mihaela Zavolan

Sepand Rastegar

Fiona Wardle

Dagmar Iber

Chirag Nepal

Csilla Varnai

Boris Lenhard

Frank Bruggeman

Shawn Burgess

Dennis Wang

Tim Stearns

Verdon Taylor

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