Grazia Cottone
Associate Professor
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About
Grazia Cottone is an Associate Professor at the University of Palermo in Italy. Her research focuses on computational methods in biophysics, specifically concerning ion channels, protein dynamics, and the modeling of toxins. Recent publications include advancements in deep learning approaches for dosimetry and studies on the conformational dynamics of botulinum toxins. She is actively involved in exploring the structural and functional paradigms of proteins through computational and theoretical frameworks.
Articles (7)
The toxicity of botulinum multi-domain neurotoxins (BoNTs) arises from a sequence of molecular events, in which the translocation of the catalytic domain through the membrane of a neurotransmitter vesicle plays a key role. A recent structural study of the translocation domain of BoNTs suggests that the interaction with the membrane is driven by the transition of an α helical switch towards a β hairpin. Atomistic simulations in conjunction with the mesoscopic Twister model are used to investigate the consequences of this proposition for the toxin–membrane interaction. The conformational mobilities of the domain, as well as the effect of the membrane, implicitly examined by comparing water and water–ethanol solvents, lead to the conclusion that the transition of the switch modifies the internal dynamics and the effect of membrane hydrophobicity on the whole protein. The central two α helices, helix 1 and helix 2, forming two coiled-coil motifs, are analyzed using the Twister model, in which the initial deformation of the membrane by the protein is caused by the presence of local torques arising from asymmetric positions of hydrophobic residues. Different torque distributions are observed depending on the switch conformations and permit an origin for the mechanism opening the membrane to be proposed.
Year:
2024
Year:
2024
Year:
2022
Year:
2022
Year:
2022
Year:
2021
Year:
2020
Collaborators (11)
Luca MARAGLIANO
Assistant Professor (RTDb)
Università Politecnica delle Marche
MAURIZIO MARRALE
Associate Professor
University of Palermo
Therese Malliavin
Université de Lorraine
Valeria Militello
University of Palermo
Letizia Chiodo
Associate Professor
Università Campus Bio-Medico di Roma
Cesare Gagliardo
University of Palermo
Martin Michael Müller
Université de Lorraine
emmanuel lemichez
INSERM
Ben Corry
Professor
Australian National University
Michel Popoff
head of the laboratory
Institut Pasteur
Matteo Ceccarelli
Full Professor
Università degli Studi di Cagliari Cittadella Universitaria
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