Grazia Cottone

Associate Professor

University of Palermo
Country flagItaly

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About

Grazia Cottone is an Associate Professor at the University of Palermo in Italy. Her research focuses on computational methods in biophysics, specifically concerning ion channels, protein dynamics, and the modeling of toxins. Recent publications include advancements in deep learning approaches for dosimetry and studies on the conformational dynamics of botulinum toxins. She is actively involved in exploring the structural and functional paradigms of proteins through computational and theoretical frameworks.

Articles (7)

The toxicity of botulinum multi-domain neurotoxins (BoNTs) arises from a sequence of molecular events, in which the translocation of the catalytic domain through the membrane of a neurotransmitter vesicle plays a key role. A recent structural study of the translocation domain of BoNTs suggests that the interaction with the membrane is driven by the transition of an α helical switch towards a β hairpin. Atomistic simulations in conjunction with the mesoscopic Twister model are used to investigate the consequences of this proposition for the toxin–membrane interaction. The conformational mobilities of the domain, as well as the effect of the membrane, implicitly examined by comparing water and water–ethanol solvents, lead to the conclusion that the transition of the switch modifies the internal dynamics and the effect of membrane hydrophobicity on the whole protein. The central two α helices, helix 1 and helix 2, forming two coiled-coil motifs, are analyzed using the Twister model, in which the initial deformation of the membrane by the protein is caused by the presence of local torques arising from asymmetric positions of hydrophobic residues. Different torque distributions are observed depending on the switch conformations and permit an origin for the mechanism opening the membrane to be proposed.

Year:

2024

Year:

2024

Year:

2022

Year:

2022

Year:

2022

Year:

2021

Year:

2020

Collaborators (11)

Luca MARAGLIANO

Assistant Professor (RTDb)

Università Politecnica delle Marche

ITALY
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MAURIZIO MARRALE

Associate Professor

University of Palermo

ITALY
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Therese Malliavin

Université de Lorraine

FRANCE
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Valeria Militello

University of Palermo

ITALY
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Letizia Chiodo

Associate Professor

Università Campus Bio-Medico di Roma

ITALY
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Cesare Gagliardo

University of Palermo

ITALY
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Martin Michael Müller

Université de Lorraine

FRANCE
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emmanuel lemichez

INSERM

FRANCE
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Ben Corry

Professor

Australian National University

AUSTRALIA
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Michel Popoff

head of the laboratory

Institut Pasteur

FRANCE
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Matteo Ceccarelli

Full Professor

Università degli Studi di Cagliari Cittadella Universitaria

ITALY
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