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HISASHI OKUMURA

准教授/Associate Professor

自然科学研究機構　生命創成探究センター/Exploratory Research Center on Life and Living Systems

Japan

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Research Interests

Biochemistry

30%

Polymer Chemistry

30%

Amyloidosis

50%

Infrared Physics

30%

Peptide Chemistry

30%

Protein Chemistry

30%

Laser Therapy

20%

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Articles20

Cell position-based evaluation of mechanical features of cells in multicellular systems

Article Link

Year:

2025

Oligomerization Mechanism of Amyloid-β Peptides at Hydrophobic Interfaces Revealed by Molecular Dynamics Simulations

Article Link

Year:

2025

Why do histone monomethylation and dimethylation cause a significant difference in binding to LEDGF?

Article Link

Year:

2025

Why Is Arginine the Only Amino Acid That Inhibits Polyglutamine Monomers from Taking on Toxic Conformations?

Article Link

Year:

2024

Nonequilibrium Molecular Dynamics Method to Generate Poiseuille-Like Flow between Lipid Bilayers

Article Link

Year:

2024

Single-Molecule Kinetic Observation of Antibody Interactions with Growing Amyloid β Fibrils

Article Link

Year:

2024

Effective mechanical potential of cell–cell interaction explains three-dimensional morphologies during early embryogenesis

Article Link

Year:

2023

Dissociation process of polyalanine aggregates by free electron laser irradiation

Article Link

Year:

2023

The Double-Layered Structure of Amyloid-β Assemblage on GM1-Containing Membranes Catalytically Promotes Fibrillization

Article Link

Year:

2023

Ingenuity in performing replica permutation: How to order the state labels for improving sampling efficiency

Article Link

Year:

2023

Perspective for Molecular Dynamics Simulation Studies of Amyloid-β Aggregates

Article Link

Year:

2023

Theoretical Analysis of the Aggregation-Inhibition Effect of Arginine on Polyglutamine Protein by the Generalized-Ensemble Method

Article Link

Year:

2023

Inhibition of amyloid-β(16–22) aggregation by polyphenols using replica permutation with solute tempering molecular dynamics simulation

Article Link

Year:

2023

Key Residue for Aggregation of Amyloid-β Peptides

Article Link

Year:

2022

State-of-the-Art Molecular Dynamics Simulation Studies of RNA-Dependent RNA Polymerase of SARS-CoV-2

Article Link

Year:

2022

Application study of infrared free-electron lasers towards the development of amyloidosis therapy

Article Link

Year:

2022

Application study of infrared free-electron lasers towards the development of amyloidosis therapy

Article Link

Year:

2022

Implementations of replica-permutation and replica sub-permutation methods into LAMMPS

Article Link

Year:

2022

Critical contributions of pre-S1 shoulder and distal TRP box in DAG-activated TRPC6 channel by PIP2 regulation

Article Link

Year:

2022

Molecular Dynamics Simulation Studies on the Aggregation of Amyloid-β Peptides and Their Disaggregation by Ultrasonic Wave and Infrared Laser Irradiation

Article Link

Year:

2022

Collaborators7

Kazuyuki Nakamura

Meiji University

JAPAN

Takayuki Uchihashi

Professor

Nagoya University

JAPAN

Maho Yagi-Utsumi

助教/Assistant Professor

自然科学研究機構　生命創成探究センター/Exploratory Research Center on Life and Living Systems

JAPAN

Satoru Itoh

助教/Assistant Professor

分子科学研究所/Institute for Molecular Science

JAPAN

Masataka Yamauchi

ACS Computers in Chemistry

JAPAN

Tetsuhisa Otani

Assistant Professor

National Institute for Physiological Sciences

JAPAN

Toshihiko Fujimori

Professor

The Graduate University for Advanced Studies, SOKENDAI

JAPAN

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HISASHI OKUMURA

准教授/Associate Professor

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Articles20

Cell position-based evaluation of mechanical features of cells in multicellular systems

Oligomerization Mechanism of Amyloid-β Peptides at Hydrophobic Interfaces Revealed by Molecular Dynamics Simulations

Why do histone monomethylation and dimethylation cause a significant difference in binding to LEDGF?

Why Is Arginine the Only Amino Acid That Inhibits Polyglutamine Monomers from Taking on Toxic Conformations?

Nonequilibrium Molecular Dynamics Method to Generate Poiseuille-Like Flow between Lipid Bilayers

Single-Molecule Kinetic Observation of Antibody Interactions with Growing Amyloid β Fibrils

Effective mechanical potential of cell–cell interaction explains three-dimensional morphologies during early embryogenesis

Dissociation process of polyalanine aggregates by free electron laser irradiation

The Double-Layered Structure of Amyloid-β Assemblage on GM1-Containing Membranes Catalytically Promotes Fibrillization

Ingenuity in performing replica permutation: How to order the state labels for improving sampling efficiency

Perspective for Molecular Dynamics Simulation Studies of Amyloid-β Aggregates

Theoretical Analysis of the Aggregation-Inhibition Effect of Arginine on Polyglutamine Protein by the Generalized-Ensemble Method

Inhibition of amyloid-β(16–22) aggregation by polyphenols using replica permutation with solute tempering molecular dynamics simulation

Key Residue for Aggregation of Amyloid-β Peptides

State-of-the-Art Molecular Dynamics Simulation Studies of RNA-Dependent RNA Polymerase of SARS-CoV-2

Application study of infrared free-electron lasers towards the development of amyloidosis therapy

Application study of infrared free-electron lasers towards the development of amyloidosis therapy

Implementations of replica-permutation and replica sub-permutation methods into LAMMPS

Critical contributions of pre-S1 shoulder and distal TRP box in DAG-activated TRPC6 channel by PIP2 regulation

Molecular Dynamics Simulation Studies on the Aggregation of Amyloid-&beta; Peptides and Their Disaggregation by Ultrasonic Wave and Infrared Laser Irradiation

Collaborators7

Kazuyuki Nakamura

Takayuki Uchihashi

Maho Yagi-Utsumi

Satoru Itoh

Masataka Yamauchi

Tetsuhisa Otani

Toshihiko Fujimori

How do I reach out?

Molecular Dynamics Simulation Studies on the Aggregation of Amyloid-β Peptides and Their Disaggregation by Ultrasonic Wave and Infrared Laser Irradiation