Howard Bradley Shaffer

Professor

UCLA Life Sciences

United States

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Howard Bradley Shaffer is a Professor at UCLA Life Sciences in the United States. His research primarily focuses on genome assembly and population genomics, with recent publications exploring various species, including the duckweed fern Azolla caroliniana and the Black Surfperch, Embiotoca jacksoni. His work also delves into ecological divergence, genetic rescue in endangered species, and the microbiome of nitrogen-fixing ferns.

Articles (19)

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2025

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2022

Collaborators (13)

Michael Song

Assistant Professor

Skidmore College

UNITED STATES

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Carl J Rothfels

UNITED STATES

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Steven R. Beissinger

UNITED STATES

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Ben Wielstra

TT Assistant Professor / ERC Starting Grant

Leiden University

NETHERLANDS

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Ian Wang

Associate Professor

University of California, Berkeley

UNITED STATES

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Donovan P German

University of California, Irvine

UNITED STATES

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Fay-Wei Li

UNITED STATES

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Erin Toffelmier

University of California

UNITED STATES

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Felipe Zapata

Assistant Professor

University of California, Los Angeles

UNITED STATES

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Gary Longo

NOAA Fisheries, SEFSC

UNITED STATES

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Felix Sperling

Professor

University of Alberta

CANADA

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Neil D Tsutsui

University of California

UNITED STATES

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Scott Hodges

Professor

University of California

UNITED STATES

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Howard Bradley Shaffer

Research Interests

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Articles (19)

The genome assembly of the duckweed fern, Azolla caroliniana

The nitrogen‐fixing fern Azolla has a complex microbiome characterized by varying degrees of cophylogenetic signal

Population Genomics, Local Adaptation and Cryptic Speciation in a Temperate Reef Fish, the Black Surfperch, Embiotoca jacksoni, Using Genome‐Wide Resequencing

Reference genome of the kidnapper ant, Polyergus mexicanus

Genomic and ecological divergence support recognition of a new species of endangered Satyrium butterfly (Lepidoptera, Lycaenidae)

Whole‐Genome Evaluation of Genetic Rescue: The Case of a Curiously Isolated and Endangered Butterfly

A draft reference genome assembly of California Pipevine, Aristolochia californica Torr.

The importance of cryptic diversity in the conservation of wide‐ranging species: The red‐footed tortoise Chelonoidis carbonarius in Colombia

A draft reference genome assembly of the Pipevine Swallowtail butterfly, Battus philenor hirsuta

Two transects reveal remarkable variation in gene flow on opposite ends of a European toad hybrid zone

Reference genome of the black rail, Laterallus jamaicensis

Reference genome of the Monkeyface Prickleback, Cebidichthys violaceus

Reference genome of the Woolly Sculpin, Clinocottus analis

A reference genome assembly for the continentally-distributed ring-necked snake, Diadophis punctatus

Reference genome of the bicolored carpenter ant, <i>Camponotus vicinus</i>

Landscape Genomics to Enable Conservation Actions: The California Conservation Genomics Project.

A brief history of population genetic research in California and an evaluation of its utility for conservation decision-making

Reference Genome of the California Sheephead, Semicossyphus pulcher (Labridae, Perciformes), A Keystone Fish Predator in Kelp Forest Ecosystems

Reference genome of the color polymorphic desert annual plant sandblossoms, Linanthus parryae

Collaborators (13)

Michael Song

Carl J Rothfels

Steven R. Beissinger

Ben Wielstra

Ian Wang

Donovan P German

Fay-Wei Li

Erin Toffelmier

Felipe Zapata

Gary Longo

Felix Sperling

Neil D Tsutsui

Scott Hodges

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