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Áine Niamh O'Toole

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Senior Researcher

University of Edinburgh

United Kingdom

Research Interests

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Recent Grants

Grant: Close

University of Edinburgh - Hosts, Pathogens & Global Health

Open Date: 2016-10-01

Close Date: 2020-10-01

Articles (20)

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Collaborators (17)

Tom Wenseleers

professor

KU Leuven

BELGIUM

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Tom Little

Professor

University of Edinburgh

UNITED KINGDOM

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Nicole Hoff

Adjunct Professor

University of California Los Angeles Jonathan and Karin Fielding School of Public Health

UNITED STATES

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Kristian Andersen

Professor

Scripps Research Institute

UNITED STATES

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Laurens Liesenborghs

Assistent Professor Emerging Infectious Diseases

Institute of Tropical Medicine Antwerp

BELGIUM

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Michael T. Wolfinger

Universität Wien

AUSTRIA

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Tulio de Oliveira

Director

Stellenbosch University

SOUTH AFRICA

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Thomas Williams

ECAT Wellcome Trust Clinical Lecturer

University of Edinburgh

UNITED KINGDOM

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Matthew Loose

Professor

University of Nottingham

UNITED KINGDOM

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Johan Van Weyenbergh

Senior Scientist

KU Leuven

BELGIUM

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Eric D'Ortenzio

Head

Institut de Recherche pour le Développement

FRANCE

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Tom Williams

University of Oxford

UNITED KINGDOM

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Alex Shaw

Imperial College London

UNITED KINGDOM

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Nkuba Ndaye Antoine

Senior Researcher

Institut de Recherche pour le Développement Délégation Régionale Occitanie

FRANCE

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Thomas Connor

Head of Public Health Genomics Programme

Cardiff University

UNITED KINGDOM

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Michael Zeller

Assistant Professor

Iowa State University

UNITED STATES

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Nicola Low

Professor of Epidemiology and Public Health

University of Bern

SWITZERLAND

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Áine Niamh O'Toole

Research Interests

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Recent Grants

Articles (20)

Epidemiology and phylogenomic characterisation of two distinct mpox outbreaks in Kinshasa, DR Congo, involving a new subclade Ia lineage: a retrospective, observational study

Clade Ia Monkeypox Virus Linked to Sexual Transmission, Democratic Republic of the Congo, August 2024 - Volume 31, Number 5—May 2025 - Emerging Infectious Diseases journal - CDC

Clade I mpox virus genomic diversity in the Democratic Republic of the Congo, 2018-2024: Predominance of zoonotic transmission

ARTIC RSV amplicon sequencing reveals global RSV genotype dynamics [version 1; peer review: 2 approved with reservations]

Rapid Emergence and Evolution of SARS-CoV-2 Intrahost Variants among COVID-19 Patients with Prolonged Infections, Singapore

Genomics reveals zoonotic and sustained human mpox spread in West Africa

A framework for automated scalable designation of viral pathogen lineages from genomic data

Epigenetic age estimation of wild mice using faecal samples

Sustained Human Outbreak of a New MPXV Clade I Lineage in the Eastern Democratic Republic of the Congo.

A phylogenetics and variant calling pipeline to support SARS-CoV-2 genomic epidemiology in the UK

Co-circulation of monkeypox virus subcladesIa and Ib in Kinshasa Province, Democratic Republic of the Congo, July to August 2024

Automated detection and classification of polioviruses from nanopore sequencing reads using piranha

Emergence of the B.1.214.2 SARS-CoV-2 lineage with an Omicron-like spike insertion and a unique upper airway immune signature

Erratum to RA "APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016"

Troubleshooting guide for DDNS V2

Publication-ready single nucleotide polymorphism visualization with snipit

SARS-CoV-2 lineage assignments using phylogenetic placement/UShER are superior to pangoLEARN machine-learning method

Troubleshooting guide for DDNS

Quality Control and Data Recording for DDNS

Correction: Implementation of Genomic Surveillance of SARS-CoV-2 in the Caribbean: Lessons learned for sustainability in resource-limited settings.

Collaborators (17)

Tom Wenseleers

Tom Little

Nicole Hoff

Kristian Andersen

Laurens Liesenborghs

Michael T. Wolfinger

Tulio de Oliveira

Thomas Williams

Matthew Loose

Johan Van Weyenbergh

Eric D'Ortenzio

Tom Williams

Alex Shaw

Nkuba Ndaye Antoine

Thomas Connor

Michael Zeller

Nicola Low

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