István Csabai

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Hungary

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Articles (15)

Classification of colorectal primer carcinoma from normal colon with mid‐infrared spectra

In this project, we used formalin‐fixed paraffin‐embedded (FFPE) tissue samples to measure thousands of spectra per tissue core with Fourier transform mid‐infrared spectroscopy using an FT‐IR imaging system. These cores varied between normal colon (NC) and colorectal primer carcinoma (CRC) tissues. We created a database to manage all the multivariate data obtained from the measurements. Then, we applied classifier algorithms to identify the tissue based on its yielded spectra. For classification, we used the random forest, a support vector machine, XGBoost, and linear discriminant analysis methods, as well as three deep neural networks. We compared two data manipulation techniques using these models and then applied filtering. In the end, we compared model performances via the sum of ranking differences (SRD).

Year:

2024

Collaborators (10)

János Lichtenberger

Professor

Eötvös Loránd University

HUNGARY

Judit Szarvas

Københavns Universitet

DENMARK

Sarah Hunt

EMBL-European Bioinformatics Institute

UNITED KINGDOM

Adrián Pesti

Semmelweis University

HUNGARY

P. Pollner

-

HUNGARY

Sandor Spisak

Head of Laboratory

Research Centre for Natural Sciences

HUNGARY

Carla Cummins

European Bioinformatics Institute

UNITED KINGDOM

Alex Olar

Eötvös Loránd University

HUNGARY

Norbert Solymosi

associate professor

University of Veterinary Medicine

HUNGARY

Björn Grüning

University of Freiburg

GERMANY
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