Ivo Hofacker

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Universität Wien

Austria

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Recent Grants

Grant: Close

RNAdeco: decorating RNA for a purpose

Open Date: 2019-11-25

Close Date:

Grant: Close

Prediction of RNA-RNA interactions

Open Date: 2016-12-01

Close Date: 2020-11-30

Grant: Close

Transcritomics of Bordetella and Human Phagocytes Interplay

Open Date: 2016-02-01

Close Date: 2019-01-01

Grant: Close

Cis-natural antisense and the enhancement of mRNA translation

Open Date: 2014-09-01

Close Date: 2017-08-01

Grant: Close

Viral mRNAs.Evolution and structure-function relationship

Open Date: 2014-01-01

Close Date: 2016-12-01

Articles (16)

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2025

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2024

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2024

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2024

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2024

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2023

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2023

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2023

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2023

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2023

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2023

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2022

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2022

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2021

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2021

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2020

Collaborators (7)

Peter F. Stadler

Leipzig University

GERMANY

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Irene K. Beckmann

Universität Wien

AUSTRIA

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Stefan Badelt

Universität Wien

AUSTRIA

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Joanna Sztuba-Solinska

Auburn University

UNITED STATES

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Michael T. Wolfinger

Universität Wien

AUSTRIA

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Christoph Flamm

Universität Wien

AUSTRIA

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Ronny Lorenz

Universität Wien

AUSTRIA

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Ivo Hofacker

Research Interests

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Contact this professor

Recent Grants

Articles (16)

Computational complexity, algorithmic scope, and evolution

3D feasibility of 2D RNA-RNA interaction paths by stepwise folding simulations

tRNA expression and modification landscapes, and their dynamics during zebrafish embryo development

Sampling globally and locally correct RNA 3D structures using Ernwin, SPQR and experimental SAXS data

Phylogenetic and Chemical Probing Information as Soft Constraints in RNA Secondary Structure Prediction

Investigating RNA–RNA interactions through computational and biophysical analysis

Avirulent phenotype promotes Bordetella pertussis adaptation to the intramacrophage environment

Mono-valent salt corrections for RNA secondary structures in the ViennaRNA package

DrTransformer: heuristic cotranscriptional RNA folding using the nearest neighbor energy model

Local RNA folding revisited

Modified RNAs and predictions with the ViennaRNA Package

Insights into the secondary and tertiary structure of the Bovine Viral Diarrhea Virus Internal Ribosome Entry Site

Caveats to Deep Learning Approaches to RNA Secondary Structure Prediction

Enhancing the Cell-Free Expression of Native Membrane Proteins by In Silico Optimization of the Coding Sequence—An Experimental Study of the Human Voltage-Dependent Anion Channel

RNAxplorer: harnessing the power of guiding potentials to sample RNA landscapes

The locality dilemma of Sankoff-like RNA alignments

Collaborators (7)

Peter F. Stadler

Irene K. Beckmann

Stefan Badelt

Joanna Sztuba-Solinska

Michael T. Wolfinger

Christoph Flamm

Ronny Lorenz

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