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Jaak Vilo

Head of Institute, Professor of Bioinformatics

University of Tartu
Country flagEstonia

Research Interests

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Articles (10)

Year:

2025

Year:

2025

Year:

2025

Year:

2025

Year:

2024

g:Profiler is a reliable and up-to-date functional enrichment analysis tool that supports various evidence types, identifier types and organisms. The toolset integrates many databases, including Gene Ontology, KEGG and TRANSFAC, to provide a comprehensive and in-depth analysis of gene lists. It also provides interactive and intuitive user interfaces and supports ordered queries and custom statistical backgrounds, among other settings. g:Profiler provides multiple programmatic interfaces to access its functionality. These can be easily integrated into custom workflows and external tools, making them valuable resources for researchers who want to develop their own solutions. g:Profiler has been available since 2007 and is used to analyse millions of queries. Research reproducibility and transparency are achieved by maintaining working versions of all past database releases since 2015. g:Profiler supports 849 species, including vertebrates, plants, fungi, insects and parasites, and can analyse any organism through user-uploaded custom annotation files. In this update article, we introduce a novel filtering method highlighting Gene Ontology driver terms, accompanied by new graph visualizations providing a broader context for significant Gene Ontology terms. As a leading enrichment analysis and gene list interoperability service, g:Profiler offers a valuable resource for genetics, biology and medical researchers. It is freely accessible at https://biit.cs.ut.ee/gprofiler.

Year:

2023

Year:

2023

Year:

2023

Year:

2023

Year:

2023

Collaborators (12)

Frederik Heymann Lassen

Research Scholar

Broad Institute

UNITED STATES
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Priit Palta

Professor of Translational Genomics

University of Tartu

ESTONIA
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David Westergaard

Associate Professor

Technical University of Denmark

DENMARK
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Hannele Laivuori

Professor

University of Tampere

FINLAND
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Reedik Mägi

Professor of Bioinformatics

University of Tartu

ESTONIA
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H S Nielsen

Professor

Copenhagen University Hospital

DENMARK
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Nikki Hubers

University of Amsterdam

NETHERLANDS
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Hedi Peterson

Professor of Bioinformatics

University of Tartu

ESTONIA
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Mette Nyegaard

Aalborg University

DENMARK
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Lili Milani

Professor & Head of Estonian Biobank

University of Tartu

ESTONIA
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Palle Duun Rohde

Aalborg University

DENMARK
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Burak Yelmen

Associate Professor

University of Tartu

ESTONIA
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