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Jaak Vilo
Head of Institute, Professor of Bioinformatics
Research Interests
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Articles (10)
Year:
2025
Year:
2025
Year:
2025
Year:
2025
Year:
2024
g:Profiler is a reliable and up-to-date functional enrichment analysis tool that supports various evidence types, identifier types and organisms. The toolset integrates many databases, including Gene Ontology, KEGG and TRANSFAC, to provide a comprehensive and in-depth analysis of gene lists. It also provides interactive and intuitive user interfaces and supports ordered queries and custom statistical backgrounds, among other settings. g:Profiler provides multiple programmatic interfaces to access its functionality. These can be easily integrated into custom workflows and external tools, making them valuable resources for researchers who want to develop their own solutions. g:Profiler has been available since 2007 and is used to analyse millions of queries. Research reproducibility and transparency are achieved by maintaining working versions of all past database releases since 2015. g:Profiler supports 849 species, including vertebrates, plants, fungi, insects and parasites, and can analyse any organism through user-uploaded custom annotation files. In this update article, we introduce a novel filtering method highlighting Gene Ontology driver terms, accompanied by new graph visualizations providing a broader context for significant Gene Ontology terms. As a leading enrichment analysis and gene list interoperability service, g:Profiler offers a valuable resource for genetics, biology and medical researchers. It is freely accessible at https://biit.cs.ut.ee/gprofiler.
Year:
2023
Year:
2023
Year:
2023
Year:
2023
Year:
2023
Collaborators (12)
Frederik Heymann Lassen
Research Scholar
Broad Institute
Priit Palta
Professor of Translational Genomics
University of Tartu
David Westergaard
Associate Professor
Technical University of Denmark
Hannele Laivuori
Professor
University of Tampere
Reedik Mägi
Professor of Bioinformatics
University of Tartu
H S Nielsen
Professor
Copenhagen University Hospital
Nikki Hubers
University of Amsterdam
Hedi Peterson
Professor of Bioinformatics
University of Tartu
Mette Nyegaard
Aalborg University
Lili Milani
Professor & Head of Estonian Biobank
University of Tartu
Palle Duun Rohde
Aalborg University
Burak Yelmen
Associate Professor
University of Tartu
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