Janneke Hille Ris Lambers

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Articles (11)

Mountain meadows are an essential part of the alpine–subalpine ecosystem; they provide ecosystem services like pollination and are home to diverse plant communities. Changes in climate affect meadow ecology on multiple levels, for example, by altering growing season dynamics. Tracking the effects of climate change on meadow diversity through the impacts on individual species and overall growing season dynamics is critical to conservation efforts. Here, we explore how to combine crowd‐sourced camera images with machine learning to quantify flowering species richness across a range of elevations in alpine meadows located in Mt. Rainier National Park, Washington, USA. We employed three machine‐learning techniques (Mask R‐CNN, RetinaNet and YOLOv5) to detect wildflower species in images taken during two flowering seasons. We demonstrate that deep learning techniques can detect multiple species, providing information on flowering richness in photographed meadows. The results indicate higher richness just above the tree line for most of the species, which is comparable with patterns found using field studies. We found that the two‐stage detector Mask R‐CNN was more accurate than single‐stage detectors like RetinaNet and YOLO, with the Mask R‐CNN network performing best overall with mean average precision (mAP) of 0.67 followed by RetinaNet (0.5) and YOLO (0.4). We found that across the methods using anchor box variations in multiples of 16 led to enhanced accuracy. We also show that detection is possible even when pictures are interspersed with complex backgrounds and are not in focus. We found differential detection rates depending on species abundance, with additional challenges related to similarity in flower characteristics, labeling errors and occlusion issues. Despite these potential biases and limitations in capturing flowering abundance and location‐specific quantification, accuracy was notable considering the complexity of flower types and picture angles in this dataset. We, therefore, expect that this approach can be used to address many ecological questions that benefit from automated flower detection, including studies of flowering phenology and floral resources, and that this approach can, therefore, complement a wide range of ecological approaches (e.g., field observations, experiments, community science, etc.). In all, our study suggests that ecological metrics like floral richness can be efficiently monitored by combining machine learning with easily accessible publicly curated datasets (e.g., Flickr, iNaturalist).

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2024

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2023

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2022

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2022

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2022

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2022

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2021

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2021

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2021

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2021

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2021

Collaborators (25)

Thomas Caignard

University of Bordeaux

FRANCE
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Michał Bogdziewicz

Assistant Professor

Adam Mickiewicz University in Poznań

POLAND
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Claire Fortunel

-

FRANCE
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Jalene LaMontagne

Professor

DePaul University

UNITED STATES
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Bogdan Brzeziecki

Head/Professor

Warsaw University of Life Sciences

POLAND
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John Poulsen

Adjunct Professor

Duke University

UNITED STATES
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MARCO CARRER

Full Professor

University of Padova

ITALY
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Jan Holík

Silva Tarouca Research Institute for Landscape and Ornamental Gardening

CZECH REPUBLIC
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Neil Pederson

-

UNITED STATES
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Martina Hobi

Swiss Federal Institute for Forest, Snow and Landscape Research

SWITZERLAND
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Ondřej Vostarek

Czech University of Life Sciences Prague

CZECH REPUBLIC
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Emily Moran

Associate Professor

University of California Merced

UNITED STATES
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Giorgio Vacchiano

Assistant professot

Università di Milano

ITALY
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David Butman

Assistant Professor

University of Washington

UNITED STATES
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Christof Bigler

Adjunct Professor

ETH Zürich

SWITZERLAND
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Mateusz Ledwoń

Institute of Systematics and Evolution of Animals, Polish Academy of Sciences

POLAND
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Christopher Moore

Assistant Professor

Colby College

UNITED STATES
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Jonas Stillhard

Swiss Federal Institute for Forest, Snow and Landscape Research

SWITZERLAND
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Kazuhiko Hoshizaki

Professor

Akita University

JAPAN
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Tuomas Aakala

Professor at University of Eastern Finland

University of Eastern Finland

FINLAND
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RAUL BONAL

Researcher / Lecturer

Universidad Complutense de Madrid

SPAIN
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Rubén Delgado Manzanedo

Assistant Professor

University of Bern

SWITZERLAND
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Peter Meyer

Head

Northwest German Forest Research Institute

GERMANY
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Aji John

University of Washington

UNITED STATES
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David Shean

University of Washington

UNITED STATES
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