Janneke Hille Ris Lambers
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Articles (11)
Mountain meadows are an essential part of the alpine–subalpine ecosystem; they provide ecosystem services like pollination and are home to diverse plant communities. Changes in climate affect meadow ecology on multiple levels, for example, by altering growing season dynamics. Tracking the effects of climate change on meadow diversity through the impacts on individual species and overall growing season dynamics is critical to conservation efforts. Here, we explore how to combine crowd‐sourced camera images with machine learning to quantify flowering species richness across a range of elevations in alpine meadows located in Mt. Rainier National Park, Washington, USA. We employed three machine‐learning techniques (Mask R‐CNN, RetinaNet and YOLOv5) to detect wildflower species in images taken during two flowering seasons. We demonstrate that deep learning techniques can detect multiple species, providing information on flowering richness in photographed meadows. The results indicate higher richness just above the tree line for most of the species, which is comparable with patterns found using field studies. We found that the two‐stage detector Mask R‐CNN was more accurate than single‐stage detectors like RetinaNet and YOLO, with the Mask R‐CNN network performing best overall with mean average precision (mAP) of 0.67 followed by RetinaNet (0.5) and YOLO (0.4). We found that across the methods using anchor box variations in multiples of 16 led to enhanced accuracy. We also show that detection is possible even when pictures are interspersed with complex backgrounds and are not in focus. We found differential detection rates depending on species abundance, with additional challenges related to similarity in flower characteristics, labeling errors and occlusion issues. Despite these potential biases and limitations in capturing flowering abundance and location‐specific quantification, accuracy was notable considering the complexity of flower types and picture angles in this dataset. We, therefore, expect that this approach can be used to address many ecological questions that benefit from automated flower detection, including studies of flowering phenology and floral resources, and that this approach can, therefore, complement a wide range of ecological approaches (e.g., field observations, experiments, community science, etc.). In all, our study suggests that ecological metrics like floral richness can be efficiently monitored by combining machine learning with easily accessible publicly curated datasets (e.g., Flickr, iNaturalist).
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2024
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2021
Collaborators (25)
Thomas Caignard
University of Bordeaux
Michał Bogdziewicz
Assistant Professor
Adam Mickiewicz University in Poznań
Claire Fortunel
-
Jalene LaMontagne
Professor
DePaul University
Bogdan Brzeziecki
Head/Professor
Warsaw University of Life Sciences
John Poulsen
Adjunct Professor
Duke University
MARCO CARRER
Full Professor
University of Padova
Jan Holík
Silva Tarouca Research Institute for Landscape and Ornamental Gardening
Neil Pederson
-
Martina Hobi
Swiss Federal Institute for Forest, Snow and Landscape Research
Ondřej Vostarek
Czech University of Life Sciences Prague
Emily Moran
Associate Professor
University of California Merced
Giorgio Vacchiano
Assistant professot
Università di Milano
David Butman
Assistant Professor
University of Washington
Christof Bigler
Adjunct Professor
ETH Zürich
Mateusz Ledwoń
Institute of Systematics and Evolution of Animals, Polish Academy of Sciences
Christopher Moore
Assistant Professor
Colby College
Jonas Stillhard
Swiss Federal Institute for Forest, Snow and Landscape Research
Kazuhiko Hoshizaki
Professor
Akita University
Tuomas Aakala
Professor at University of Eastern Finland
University of Eastern Finland
RAUL BONAL
Researcher / Lecturer
Universidad Complutense de Madrid
Rubén Delgado Manzanedo
Assistant Professor
University of Bern
Peter Meyer
Head
Northwest German Forest Research Institute
Aji John
University of Washington
David Shean
University of Washington
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