Jin Yu

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Assistant Professor

University of California, Irvine

United States

Research Interests

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Recent Grants

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Dissecting non-equilibrium dynamics in single molecule gene transcription and replication

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Rapid: Impact of inhibitors on SARS-CoV-2 polymerase and fidelity control of RNA synthesis

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Articles (15)

Correction to “Dissecting the CRISPR Cas1-Cas2 Protospacer Binding and Selection Mechanism by Using Molecular Dynamics Simulations”

Year:

2024

Computational insights into diverse binding modes of the allosteric modulator and their regulation on dopamine D1 receptor

Year:

2024

Dissecting the CRISPR Cas1-Cas2 Protospacer Binding and Selection Mechanism by Using Molecular Dynamics Simulations

Year:

2024

Trapping a non-cognate nucleotide upon initial binding for replication fidelity control in SARS-CoV-2 RNA dependent RNA polymerase

Year:

2024

On the common pathways of deformation: RNA vs DNA under interrogation

Year:

2023

Energetic vs. entropic stabilization between a Remdesivir analogue and cognate ATP upon binding and insertion into the active site of SARS-CoV-2 RNA dependent RNA polymerase

Year:

2023

Energetic vs. entropic stabilization between a Remdesivir analogue and cognate ATP upon binding and insertion into the active site of SARS-CoV-2 RNA dependent RNA polymerase

Year:

2023

Nonspecific vs. specific DNA binding free energetics of a transcription factor domain protein

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2023

Biased Activation Mechanism Induced by GPCR Heterodimerization: Observations from μOR/δOR Dimers

Year:

2022

An Interpretable Convolutional Neural Network Framework for Analyzing Molecular Dynamics Trajectories: a Case Study on Functional States for G-Protein-Coupled Receptors

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2022

Switching promotor recognition of phage RNA polymerase in silico along lab-directed evolution path

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2022

Two-phase dynamics of DNA supercoiling based on DNA polymer physics

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2022

Computational investigations on target-site searching and recognition mechanisms by thymine DNA glycosylase during DNA repair process

Year:

2022

RQC helical hairpin in Bloom's syndrome helicase regulates DNA unwinding by dynamically intercepting nascent nucleotides

Year:

2022

Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion

Year:

2022

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