Joanna Sulkowska

associate professor

University of Warsaw

Poland

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Joanna Sulkowska is an associate professor at the University of Warsaw, Poland. Her research expertise encompasses the study of biopolymer structures, particularly focusing on knotting phenomena in proteins and RNA. Recent publications include the development of web servers such as AlphaLasso and AlphaKnot 2.0, and investigating the conservation of knotted topologies in biomolecules. In addition, she explores virtual screening techniques for identifying novel ligands related to drug binding and SARS-CoV-2 variants.

Articles (14)

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2025

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2024

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2024

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2021

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2020

Collaborators (3)

Tomasz Żok

assistant professor

Poznan University of Technology

POLAND

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Paweł Rubach

Assistant Professor

SGH Warsaw School of Economics

POLAND

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Marta Szachniuk

Associate Professor

Poznan University of Technology

POLAND

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Joanna Sulkowska

Research Interests

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About

Articles (14)

AlphaLasso—a web server to identify loop and lasso motifs in 3D structure of biopolymers

Theta‐curves in proteins

AlphaKnot 2.0: a web server for the visualization of proteins’ knotting and a database of knotted AlphaFold-predicted models

Knotted artifacts in predicted 3D RNA structures

Knots and θ-Curves Identification in Polymeric Chains and Native Proteins Using Neural Networks

AlphaFold predicts novel human proteins with knots

Identification of Novel CB2 Ligands through Virtual Screening and In Vitro Evaluation

Conservation of knotted and slipknotted topology in transmembrane transporters

Amino acid variants of SARS-CoV-2 papain-like protease have impact on drug binding

Identification of CB1 Ligands among Drugs, Phytochemicals and Natural-Like Compounds: Virtual Screening and In Vitro Verification

Lasso Proteins—Unifying Cysteine Knots and Miniproteins

Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor

SARS-CoV-2 Papain-Like Protease Potential Inhibitors—In Silico Quantitative Assessment

Mg2+-Dependent Methyl Transfer by a Knotted Protein: A Molecular Dynamics Simulation and Quantum Mechanics Study

Collaborators (3)

Tomasz Żok

Paweł Rubach

Marta Szachniuk

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