Johanna Dabernig-Heinz

Medical University of Graz

Austria

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Articles (12)

Year:

2025

Year:

2025

Year:

2025

Year:

2024

Year:

2024

Year:

2024

Year:

2023

Year:

2023

Year:

2023

Klebsiella oxytoca is a ubiquitous bacterium that is increasingly associated with inflammatory diseases. Here, we report the hybrid assembled genome for cytotoxic K. oxytoca strain AHC-6. The genome comprises a total of 5.7 Mbp, with a GC content of 55.2% and 5,258 coding sequences after assembly and annotation.

Year:

2023

Year:

2022

Year:

2022

Collaborators (9)

Gernot Zarfel

Medical University of Graz

AUSTRIA

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Kristina Sefc

Professor

Karl-Franzens-Universität Graz

AUSTRIA

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Werner Ruppitsch

Prof. Microbial Genomics and Antimicrobial Resistance

Medical University of Innsbruck

AUSTRIA

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Ivo Steinmetz

Medical University of Graz

AUSTRIA

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Clemens Kittinger

Medical University of Graz

AUSTRIA

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Ellen L. Zechner

Graz University of Technology

AUSTRIA

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Sabine Kienesberger

Graz University of Technology

AUSTRIA

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Gabriel E. Wagner

Medical University of Graz

AUSTRIA

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Sven Halbedel

GERMANY

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Johanna Dabernig-Heinz

Research Interests

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Articles (12)

Improving Nanopore sequencing-based core genome MLST for global infection control: a strategy for GC-rich pathogens like Burkholderia pseudomallei

Accurate and reproducible whole-genome genotyping for bacterial genomic surveillance with Nanopore sequencing data

Decoding bacterial methylomes in four public health-relevant microbial species: nanopore sequencing enables reproducible analysis of DNA modifications

A multicenter study on accuracy and reproducibility of nanopore sequencing-based genotyping of bacterial pathogens.

Core genome multilocus sequence typing (cgMLST) applicable to the monophyletic Klebsiella oxytoca species complex

Accurate bacterial outbreak tracing with Oxford Nanopore sequencing and reduction of methylation-induced errors

Genome-Based Species Diversity Assessment in the Pseudomonas chlororaphis Phylogenetic Subgroup and Proposal of Pseudomonas danubii sp. nov. Isolated from Freshwaters, Soil, and Rhizosphere

Real-Time Nanopore Q20+ Sequencing Enables Extremely Fast and Accurate Core Genome MLST Typing and Democratizes Access to High-Resolution Bacterial Pathogen Surveillance

Aggression and spatial positioning of kin and non-kin fish in social groups

Complete Genome Sequence of Klebsiella oxytoca Strain AHC-6, Isolated from a Patient during Acute Antibiotic-Associated Hemorrhagic Colitis

Parentage analysis across age cohorts reveals sex differences in reproductive skew in a group‐living cichlid fish, Neolamprologus multifasciatus

Patterns of sex-biased dispersal are consistent with social and ecological constraints in a group-living cichlid fish.

Collaborators (9)

Gernot Zarfel

Kristina Sefc

Werner Ruppitsch

Ivo Steinmetz

Clemens Kittinger

Ellen L. Zechner

Sabine Kienesberger

Gabriel E. Wagner

Sven Halbedel

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