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Juan Cortés
Research Interests
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Articles (19)
Year:
2026
Year:
2026
Year:
2025
Year:
2025
Year:
2025
Year:
2025
Year:
2024
Year:
2024
The exploration of the energy landscape of a chemical system is essential for understanding and predicting its observable properties. In most cases, this is a challenging task due to the high complexity of such landscapes, which often consist of multiple, possibly hierarchical basins that are difficult to locate and thoroughly explore. In this study, we introduce a novel method, called IGLOO (Iterative Global Exploration and Local Optimization), which aims to achieve a more efficient global exploration of the conformational space compared to existing techniques. The method utilizes a tree-based exploration inspired by the Rapidly exploring Random Tree (RRT) algorithm originating from robotics. IGLOO dynamically adjusts its exploration strategy to both homogeneously scan the landscape and focus on promising regions, avoiding redundant exploration. We evaluated IGLOO using models of two polypeptides and compared its performance to the traditional basin-hopping method and a hybrid method that also incorporates the RRT algorithm. We find that IGLOO outperforms both alternative methods in terms of efficiently and comprehensively exploring the molecular conformational space. This approach can be easily generalized to other chemical systems such as molecules on surfaces or crystalline systems.
Year:
2023
Year:
2022
Year:
2022
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2022
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2022
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2021
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2021
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2021
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2020
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2020
Year:
2020
Collaborators (10)
Jiri Vondrasek
group leader
Czech Academy of Sciences, Institute of Organic Chemistry and Biochemistry
Péter Nagy
Full Professor
Semmelweis University
Magali Mathieu
Lab Head
Sanofi-Aventis Recherche et Developpement Vitry-sur-Seine Alfortville
Ana M Melo
Assistant Researcher (FCT- Tenure)
University of Lisbon
Peter Tompa
Vrije Universiteit Brussel
Benjamin Schuler
Full Professor of Molecular Biophysics
University of Zurich
Frans Mulder
Universitäts Professor
Johannes Kepler University Linz
Pau Bernadó
University of Montpellier
Nathalie Tarrat
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Alexander Monzon
Assistant Professor Tenure-Track (RTT researcher)
University of Padua
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