Kentaro Ifuku
Professor
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About
Professor Kentaro Ifuku is a faculty member at Kyoto University, Japan. His research focuses on the protective mechanisms of chloroplasts against environmental stress, particularly in photosystem II and the structure of photosystem I supercomplexes. He has published extensively on topics such as photoinhibition, ATP synthase evolution, and oxidative damage in plants, contributing significantly to the understanding of plant photosynthesis and stress responses.
Articles (24)
Year:
2025
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2025
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2025
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2025
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2025
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2025
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2025
Light-harvesting complexes (LHCs) are diversified among photosynthetic organisms, and the structure of the photosystem I-LHC (PSI-LHCI) supercomplex has been shown to be variable depending on the species of organisms. However, the structural and evolutionary correlations of red-lineage LHCs are unknown. Here, we determined a 1.92-Å resolution cryoelectron microscopic structure of a PSI-LHCI supercomplex isolated from the red alga Cyanidium caldarium RK-1 (NIES-2137), which is an important taxon in the Cyanidiophyceae. We subsequently investigated the correlations of PSI-LHCIs from different organisms through structural comparisons and phylogenetic analysis. The PSI-LHCI structure obtained shows five LHCI subunits surrounding a PSI-monomer core. The five LHCIs are composed of two Lhcr1s, two Lhcr2s, and one Lhcr3. Phylogenetic analysis of LHCs bound to PSI in the red-lineage algae showed clear orthology of LHCs between C. caldarium and Cyanidioschyzon merolae , whereas no orthologous relationships were found between C. caldarium Lhcr1–3 and LHCs in other red-lineage PSI-LHCI structures. These findings provide evolutionary insights into conservation and diversity of red-lineage LHCs associated with PSI.
Year:
2024
The molecular entity responsible for catalyzing ferredoxin (Fd)-dependent cyclic electron flow around photosystem I (Fd-CEF) remains unidentified. To reveal the in vivo molecular mechanism of Fd-CEF, evaluating ferredoxin reduction–oxidation kinetics proves to be a reliable indicator of Fd-CEF activity. Recent research has demonstrated that the expression of Fd-CEF activity is contingent upon the oxidation of plastoquinone. Moreover, chloroplast NAD(P)H dehydrogenase does not catalyze Fd-CEF in Arabidopsis thaliana. In this study, we analyzed the impact of reduced Fd on Fd-CEF activity by comparing wild-type and pgr5-deficient mutants (pgr5hope1). PGR5 has been proposed as the mediator of Fd-CEF, and pgr5hope1 exhibited a comparable CO2 assimilation rate and the same reduction–oxidation level of PQ as the wild type. However, P700 oxidation was suppressed with highly reduced Fd in pgr5hope1, unlike in the wild type. As anticipated, the Fd-CEF activity was enhanced in pgr5hope1 compared to the wild type, and its activity further increased with the oxidation of PQ due to the elevated CO2 assimilation rate. This in vivo research clearly demonstrates that the expression of Fd-CEF activity requires not only reduced Fd but also oxidized PQ. Importantly, PGR5 was found to not catalyze Fd-CEF, challenging previous assumptions about its role in this process.
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2024
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2024
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2024
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2024
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2024
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2023
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2023
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2023
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2023
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2022
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2022
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2022
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2022
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2022
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2022
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2022
Collaborators (17)
Shinya Wada
Assistant professor
Kobe University
Shuji Nakanishi
Prof.
Osaka University
Koji Yonekura
Tohoku University
Koji Kato
Okayama University
Shin-ichi Arimura
Associate Professor
University of Tokyo
Seiji Akimoto
Kobe University
Makio Yokono
准教授/Associate Professor
基礎生物学研究所/National Institute for Basic Biology
Yuji Suzuki
Iwate University
Jian-Ren Shen
Professor
Okayama University
Eiichi Shoguchi
Okinawa Institute of Science and Technology Graduate University
Ryo Nagao
Shizuoka University
Ko Noguchi
Professor
Tokyo University of Pharmacy and Life Sciences
Ikuo Uchiyama
Associate professor
National Institute for Basic Biology
Shunsuke Hirooka
National Institute of Genetics
Akifumi Sugiyama
Associate Professor
Kyoto University
Chikahiro Miyake
Kobe University
Naoyuki Miyazaki
Assistant Professor
University of Tsukuba
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