Kentaro Ifuku

Professor

Kyoto University
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About

Professor Kentaro Ifuku is a faculty member at Kyoto University, Japan. His research focuses on the protective mechanisms of chloroplasts against environmental stress, particularly in photosystem II and the structure of photosystem I supercomplexes. He has published extensively on topics such as photoinhibition, ATP synthase evolution, and oxidative damage in plants, contributing significantly to the understanding of plant photosynthesis and stress responses.

Articles (24)

Year:

2025

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2025

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2025

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2025

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2025

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2025

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2025

Light-harvesting complexes (LHCs) are diversified among photosynthetic organisms, and the structure of the photosystem I-LHC (PSI-LHCI) supercomplex has been shown to be variable depending on the species of organisms. However, the structural and evolutionary correlations of red-lineage LHCs are unknown. Here, we determined a 1.92-Å resolution cryoelectron microscopic structure of a PSI-LHCI supercomplex isolated from the red alga Cyanidium caldarium RK-1 (NIES-2137), which is an important taxon in the Cyanidiophyceae. We subsequently investigated the correlations of PSI-LHCIs from different organisms through structural comparisons and phylogenetic analysis. The PSI-LHCI structure obtained shows five LHCI subunits surrounding a PSI-monomer core. The five LHCIs are composed of two Lhcr1s, two Lhcr2s, and one Lhcr3. Phylogenetic analysis of LHCs bound to PSI in the red-lineage algae showed clear orthology of LHCs between C. caldarium and Cyanidioschyzon merolae , whereas no orthologous relationships were found between C. caldarium Lhcr1–3 and LHCs in other red-lineage PSI-LHCI structures. These findings provide evolutionary insights into conservation and diversity of red-lineage LHCs associated with PSI.

Year:

2024

The molecular entity responsible for catalyzing ferredoxin (Fd)-dependent cyclic electron flow around photosystem I (Fd-CEF) remains unidentified. To reveal the in vivo molecular mechanism of Fd-CEF, evaluating ferredoxin reduction–oxidation kinetics proves to be a reliable indicator of Fd-CEF activity. Recent research has demonstrated that the expression of Fd-CEF activity is contingent upon the oxidation of plastoquinone. Moreover, chloroplast NAD(P)H dehydrogenase does not catalyze Fd-CEF in Arabidopsis thaliana. In this study, we analyzed the impact of reduced Fd on Fd-CEF activity by comparing wild-type and pgr5-deficient mutants (pgr5hope1). PGR5 has been proposed as the mediator of Fd-CEF, and pgr5hope1 exhibited a comparable CO2 assimilation rate and the same reduction–oxidation level of PQ as the wild type. However, P700 oxidation was suppressed with highly reduced Fd in pgr5hope1, unlike in the wild type. As anticipated, the Fd-CEF activity was enhanced in pgr5hope1 compared to the wild type, and its activity further increased with the oxidation of PQ due to the elevated CO2 assimilation rate. This in vivo research clearly demonstrates that the expression of Fd-CEF activity requires not only reduced Fd but also oxidized PQ. Importantly, PGR5 was found to not catalyze Fd-CEF, challenging previous assumptions about its role in this process.

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2024

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2024

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2024

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2024

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2024

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2023

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2023

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2023

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2023

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2022

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2022

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2022

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2022

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2022

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2022

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2022

Collaborators (17)

Shinya Wada

Assistant professor

Kobe University

JAPAN
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Shuji Nakanishi

Prof.

Osaka University

JAPAN
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Koji Yonekura

Tohoku University

JAPAN
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Koji Kato

Okayama University

JAPAN
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Shin-ichi Arimura

Associate Professor

University of Tokyo

JAPAN
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Seiji Akimoto

Kobe University

JAPAN
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Makio Yokono

准教授/Associate Professor

基礎生物学研究所/National Institute for Basic Biology

JAPAN
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Yuji Suzuki

Iwate University

JAPAN
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Jian-Ren Shen

Professor

Okayama University

JAPAN
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Eiichi Shoguchi

Okinawa Institute of Science and Technology Graduate University

JAPAN
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Ryo Nagao

Shizuoka University

JAPAN
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Ko Noguchi

Professor

Tokyo University of Pharmacy and Life Sciences

JAPAN
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Ikuo Uchiyama

Associate professor

National Institute for Basic Biology

JAPAN
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Shunsuke Hirooka

National Institute of Genetics

JAPAN
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Akifumi Sugiyama

Associate Professor

Kyoto University

JAPAN
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Chikahiro Miyake

Kobe University

JAPAN
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Naoyuki Miyazaki

Assistant Professor

University of Tsukuba

JAPAN
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