Koichi Ogami
Assistant professor
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About
Koichi Ogami is an Assistant Professor at Nagoya University in Japan. His research focuses on gene regulation, particularly the roles of microRNAs, enhancer RNAs, and RNA-binding proteins in cellular processes and pathophysiology. Recent articles by Professor Ogami include studies on the regulation of mRNA polyadenylation, transcript shortening, and the implications of RNA dynamics in cancer cell proliferation.
Articles (10)
Year:
2025
Year:
2025
During early embryonic development, the RNA-binding protein CPEB mediates cytoplasmic polyadenylation and translational activation through a combinatorial code defined by the cy-toplasmic polyadenylation element (CPE) present in maternal mRNAs. However, in non-neuronal somatic cells, CPEB accelerates deadenylation to repress translation of the target, including c-myc mRNA, through an ill-defined cis-regulatory mechanism. Using RNA mutagenesis and electrophoretic mobility shift assays, we demonstrated that a combination of tandemly arranged consensus (cCPE) and non-consensus (ncCPE) cytoplasmic polyadenylation elements (CPEs) constituted a combinatorial code for CPEB-mediated c-myc mRNA decay. CPEB binds to cCPEs with high affinity (Kd = ~250 nM), whereas it binds to ncCPEs with low affinity (Kd > ~900 nM). CPEB binding to a cCPE enhances CPEB binding to the proximal ncCPE. In contrast, while a cCPE did not activate mRNA degradation, an ncCPE was essential for the induction of degradation, and a combination of a cCPE and ncCPEs further promoted degradation. Based on these findings, we propose a model in which the high-affinity binding of CPEB to the cCPE accelerates the binding of the second CPEB to the ncCPEs, resulting in the recruitment of deadenylases, acceleration of deadenylation, and repression of c-myc mRNAs.
Year:
2023
Year:
2023
Year:
2022
Year:
2021
Year:
2020
Year:
2020
Year:
2020
Year:
2020
Collaborators (2)
Bin Tian
Professor
The Wistar Institute
Shin-ichi Hoshino
Nagoya University
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