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Lior Pachter

California Institute of Technology

United States

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Articles (16)

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2026

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2026

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2026

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2025

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2022

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2022

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2021

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2021

Collaborators (2)

Ali Booeshaghi

California Institute of Technology

UNITED STATES

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Laura Luebbert

Broad Institute

UNITED STATES

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Lior Pachter

Research Interests

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Articles (16)

Characterization of spatial homogeneous regions in tissues with concordex

Detection of viral sequences at single-cell resolution identifies novel viruses associated with host gene expression changes

Estimating cis and trans contributions to differences in gene regulation

Monod: model-based discovery and integration through fitting stochastic transcriptional dynamics to single-cell sequencing data

Trajectory inference from single-cell genomics data with a process time model

Accurate quantification of nascent and mature RNAs from single-cell and single-nucleus RNA-seq

Author Correction: Principles of open source bioinstrumentation applied to the poseidon syringe pump system

The specious art of single-cell genomics

Length biases in single-cell RNA sequencing of pre-mRNA

Interpretable and tractable models of transcriptional noise for the rational design of single-molecule quantification experiments

RNA velocity unraveled

Museum of spatial transcriptomics

Publisher Correction: Museum of spatial transcriptomics

Modeling bursty transcription and splicing with the chemical master equation

BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq

Modular, efficient and constant-memory single-cell RNA-seq preprocessing

Collaborators (2)

Ali Booeshaghi

Laura Luebbert

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