Marco J. Cabrerizo

Summary Browning and nutrient inputs from extreme rainfall, together with increased vertical mixing due to strong winds, are more frequent in coastal ecosystems; however, their interactive effects on phytoplankton are poorly understood. We conducted experiments to quantify how browning, together with different mixing speeds (fluctuating radiation), and a nutrient pulse alter primary productivity and photosynthetic efficiency in estuarine phytoplankton communities. Phytoplankton communities (grazers excluded) were exposed simultaneously to these drivers, and key photosynthetic targets were quantified: oxygen production, electron transport rates (ETRs), and carbon fixation immediately following collection and after a 2‐d acclimation/adaptation period. Increasing mixing speeds in a turbid water column (e.g. browning) significantly decreased ETRs and carbon fixation in the short term. Acclimation/adaptation to this condition for 2 d resulted in an increase in nanoplanktonic diatoms and a community that was photosynthetically more efficient; however, this did not revert the decreasing trend in carbon fixation with increased mixing speed. The observed interactive effects (resulting from extreme rainfall and strong winds) may have profound implications in the trophodynamics of highly productive system such as the Southwest Atlantic Ocean due to changes in the size structure of the community and reduced productivity.