Mihai Pop

Professor

University of Maryland at College Park

United States

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Professor Mihai Pop is a faculty member at the University of Maryland, College Park, USA. His research encompasses areas such as cancer-associated microbiomes, metagenomic data analysis, and the impact of artificial intelligence on biological databases. He has contributed significantly to understanding microbial communities and genomic analysis through recent articles focusing on strain assembly and taxonomic classifiers.

Mihai Pop

Research Interests

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Articles (24)

Biological databases in the age of generative artificial intelligence

Analysis of metagenomic data

Challenges and Opportunities in Analyzing Cancer-Associated Microbiomes

Challenges and Opportunities in Analyzing Cancer-Associated Microbiomes.

Strainy: phasing and assembly of strain haplotypes from long-read metagenome sequencing

Database size positively correlates with the loss of species-level taxonomic resolution for the 16S rRNA and other prokaryotic marker genes

Benchmarking short and long read polishing tools for nanopore assemblies: achieving near-perfect genomes for outbreak isolates

The impact of transitive annotation on the training of taxonomic classifiers

Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigation

SCRAPT: an iterative algorithm for clustering large 16S rRNA gene data sets

PRAWNS: compact pan-genomic features for whole-genome population genomics

Gut Microbiome–Wide Search for Bacterial Azoreductases Reveals Potentially Uncharacterized Azoreductases Encoded in the Human Gut Microbiome

Variations in Bacterial Communities and Antibiotic Resistance Genes Across Diverse Recycled and Surface Water Irrigation Sources in the Mid-Atlantic and Southwest United States: A CONSERVE Two-Year Field Study

SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning

Evaluating the accuracy of Listeria monocytogenes assemblies from quasimetagenomic samples using long and short reads

Whole-Genome Assessment of Clinical Acinetobacter baumannii Isolates Uncovers Potentially Novel Factors Influencing Carbapenem Resistance

A critical assessment of gene catalogs for metagenomic analysis

TIPP2: metagenomic taxonomic profiling using phylogenetic markers

What do Eulerian and Hamiltonian cycles have to do with genome assembly?

Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins

Genomic Drivers of Multidrug-Resistant Shigella Affecting Vulnerable Patient Populations in the United States and Abroad

Benchmarking of computational error-correction methods for next-generation sequencing data

Seasonal dynamics in taxonomy and function within bacterial and viral metagenomic assemblages recovered from a freshwater agricultural pond

Zero-Valent Iron Sand Filtration Can Reduce Human and Plant Pathogenic Bacteria While Increasing Plant Growth Promoting Bacteria in Reclaimed Water

Collaborators (10)

Lynn Bry

Sanjat Kanjilal

Erin K Molloy

Teresa Attwood

Niranjan Nagarajan

Suhana Chattopadhyay

Rianna Murray

Shoba Ranganathan

Onur Mutlu

Amy R. Sapkota

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