Mohammad Mofrad

Professor

University of California, Berkeley

United States

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Professor Mohammad Mofrad is a faculty member at the University of California Berkeley, USA. His research focuses on antimicrobial peptide interactions, mechanomedicines, and the molecular transport involved in nuclear pore complex dynamics. His recent work includes studies on gut microbiome interactions, polymer physics in chromatin organization, and the molecular characteristics of FG-Nups.

Articles (27)

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2022

Collaborators (4)

Shukei Sugita

Associate Professor

Nagoya Institute of Technology

JAPAN

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Tapio Ala-Nissila

Aalto University

FINLAND

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Taiji Adachi

Kyoto University

JAPAN

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Grace D. O’Connell

UNITED STATES

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Mohammad Mofrad

Research Interests

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About

Articles (27)

Emerging mechanomedicines informed by mechanotransduction along the integrin–cytoskeleton–nucleus axis

Antimicrobial peptide interactions with bacterial cell membranes

Block ratio optimized cationic polyacrylamides for enhanced nitrate rejection under applied potential

Meta Biome: a multiscale model integrating agent-based and metabolic networks to reveal spatial regulation in gut mucosal microbial communities

Role of pore dilation in molecular transport through the nuclear pore complex: Insights from polymer scaling theory

Unravelling the Glycan Code: Molecular Dynamics and Quantum Chemistry Reveal How O‐Glycan Functional Groups Govern OgpA Selectivity in Mucin Degradation by Akkermansia muciniphila

Bridging scales in chromatin organization: Computational models of loop formation and their implications for genome function

Deciphering the intrinsically disordered characteristics of the FG-Nups through the lens of polymer physics

Fine-tuning protein embeddings for functional similarity evaluation

Integrin mechanosensing relies on a pivot-clip mechanism to reinforce cell adhesion

HGTDR: Advancing drug repurposing with heterogeneous graph transformers

Deep Learning for Perfusion Cerebral Blood Flow (CBF) and Volume (CBV) Predictions and Diagnostics

Enhanced HP1α homodimer interaction via force-induced salt bridge formation: implications for chromatin crosslinking and phase separation

Regulating transport efficiency through the nuclear pore complex: The role of binding affinity with FG-Nups

Metabolic interactions shape emergent biofilm structures in a conceptual model of gut mucosal bacterial communities

Adsorption Process of Various Antimicrobial Peptides on Different Surfaces of Cellulose

Gut-on-a-chip models for dissecting the gut microbiology and physiology

On the potentials of sialic acid derivatives as inhibitors for the mumps virus: A molecular dynamics and quantum chemistry investigation

On the Sensitivity and Affinity of Gold, Silver, and Platinum Surfaces against the SARS-CoV-2 Virus: A Comparative Computational Study

GO Bench: shared hub for universal benchmarking of machine learning-based protein functional annotations

Mercapto-pyrimidines are reversible covalent inhibitors of the papain-like protease (PLpro) and inhibit SARS-CoV-2 (SCoV-2) replication

Force transmission and SUN-KASH higher-order assembly in the LINC complex models

Multiscale computational framework to investigate integrin mechanosensing and cell adhesion

Decoding the Effect of Hydrostatic Pressure on TRPV1 Lower-Gate Conformation by Molecular-Dynamics Simulation

Effects of Ionic Liquids on the Stabilization Process of Gold Nanoparticles

Design of a flexing organ-chip to model in situ loading of the intervertebral disc

On modeling the multiscale mechanobiology of soft tissues: Challenges and progress

Collaborators (4)

Shukei Sugita

Tapio Ala-Nissila

Taiji Adachi

Grace D. O’Connell

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