Muhammad Ali

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Martin Naughton Assistant Professor in Environmental Microbiology

Trinity College Dublin

Ireland

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About

Dr. Muhammad Ali is the Martin Naughton Assistant Professor in Environmental Microbiology at Trinity College Dublin, Ireland. His research focuses on microbial functionalities in wastewater treatment, particularly through genome-resolved metatranscriptomics and community assembly dynamics. Recent publications address topics such as the phylogeny and metabolism of polyphosphate-accumulating organisms, and the transformation of wastewater treatment plants into resource recovery facilities.

Recent Grants

Grant: Close

Near Term Grand Challenge

Open Date: 2020-04-01

Close Date: 2022-03-01

Grant: Close

TAQADAM Startup Accelerator

Open Date: 2019-04-01

Close Date:

Grant: Close

PostUp: KAUST Postdoc Innovation Program

Open Date: 2018-03-01

Close Date: 2018-12-01

Articles (15)

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2025

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Collaborators (8)

Laura van Niftrik

Professor in Microbial Cell Biology & Biochemistry

Radboud University

NETHERLANDS

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Suman Bajracharya

Lulea University of Technology

SWEDEN

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Pascal E. Saikaly

SAUDI ARABIA

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Donal Leech

IRELAND

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Laurence Gill

IRELAND

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Mario Pronk

Delft University of Technology

NETHERLANDS

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Paul Kavanagh

The Queen's University Belfast

UNITED KINGDOM

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Himanshu Mishra

SAUDI ARABIA

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Muhammad Ali

Research Interests

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About

Recent Grants

Articles (15)

Genome-Resolved Metatranscriptomics Provide Insights on Immigration Influence in Structuring Microbial Community Assembly of a Full-Scale Aerobic Granular Sludge Plant

Genome-resolved metatranscriptomics unveils distinct microbial functionalities across aggregate sizes in aerobic granular sludge

Demystifying polyphosphate-accumulating organisms relevant to wastewater treatment: A review of their phylogeny, metabolism, and detection

Striking a Balance: Decentralized and Centralized Wastewater Treatment Systems for Advancing Sustainable Development Goal 6

Performance Evaluation of a Pilot-Scale Aerobic Granular Sludge Integrated with Gravity-Driven Membrane System Treating Domestic Wastewater

Adopting the circular model: opportunities and challenges of transforming wastewater treatment plants into resource recovery facilities in Saudi Arabia

Spatial Variation of the Microbial Community Structure of On-Site Soil Treatment Units in a Temperate Climate, and the Role of Pre-treatment of Domestic Effluent in the Development of the Biomat Community

Competition of two highly specialized and efficient acetoclastic electroactive bacteria for acetate in biofilm anode of microbial electrolysis cell

Relative Importance of Stochastic Assembly Process of Membrane Biofilm Increased as Biofilm Aged

Enrichment of Salt-tolerant CO2–Fixing Communities in Microbial Electrosynthesis Systems using Porous Ceramic Hollow Tube Wrapped with Carbon Cloth as Cathode and for CO2 Supply

Extracellular electron transfer-dependent anaerobic oxidation of ammonium by anammox bacteria

Electroactive biofilms on surface functionalized anodes: The anode respiring behavior of a novel electroactive bacterium, Desulfuromonas acetexigens

Comparative Genome-Centric Analysis of Freshwater and Marine ANAMMOX Cultures Suggests Functional Redundancy in Nitrogen Removal Processes

Gel immobilization: A strategy to improve the performance of anaerobic ammonium oxidation (anammox) bacteria for nitrogen-rich wastewater treatment

Application of an enrichment culture of the marine anammox bacterium “Ca. Scalindua sp. AMX11” for nitrogen removal under moderate salinity and in the presence of organic carbon

Collaborators (8)

Laura van Niftrik

Suman Bajracharya

Pascal E. Saikaly

Donal Leech

Laurence Gill

Mario Pronk

Paul Kavanagh

Himanshu Mishra

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