Nathan Sheffield

Assistant Professor

University of Virginia

United States

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Articles (14)

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2024

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2024

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2024

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2023

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2022

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2020

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2020

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2020

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2020

Collaborators (5)

R. Ariel Gomez

University of Virginia School of Medicine

UNITED STATES

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Maria Luisa S. Sequeira-Lopez

University of Virginia School of Medicine

UNITED STATES

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Donald Brown

University of Virginia

UNITED STATES

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Neal Magee

Associate Professor

University of Virginia

UNITED STATES

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Kristyna Kupkova

University of Virginia

UNITED STATES

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Nathan Sheffield

Research Interests

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Articles (14)

Methods for constructing and evaluating consensus genomic interval sets

Inhibition of Renin Expression Is Regulated by an Epigenetic Switch From an Active to a Poised State

Fast clustering and cell-type annotation of scATAC data using pre-trained embeddings

Methods for evaluating unsupervised vector representations of genomic regions

DeepGSEA: explainable deep gene set enrichment analysis for single-cell transcriptomic data

Joint Representation Learning for Retrieval and Annotation of Genomic Interval Sets

PEPhub: a database, web interface, and API for editing, sharing, and validating biological sample metadata

Renin Cell Development: Insights From Chromatin Accessibility and Single-Cell Transcriptomics

GEOfetch: a command-line tool for downloading data and standardized metadata from GEO and SRA

GenomicDistributions: fast analysis of genomic intervals with Bioconductor

IGD: high-performance search for large-scale genomic interval datasets.

COCOA: coordinate covariation analysis of epigenetic heterogeneity.

Analytical Approaches for ATAC-seq Data Analysis.

Refgenie: a reference genome resource manager.

Collaborators (5)

R. Ariel Gomez

Maria Luisa S. Sequeira-Lopez

Donald Brown

Neal Magee

Kristyna Kupkova

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