Niema Moshiri

Assistant Teaching Professor

University of California, San Diego

United States

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About

Niema Moshiri is an Assistant Teaching Professor at the University of California, San Diego. His research focuses on bioinformatics and computational biology, with recent publications addressing topics such as phylogenetics, genomic surveillance, and the application of high-performance computing in analyzing genomic data. His work includes the development of tools and libraries for viral genomics and machine learning applications in health sciences.

Articles (17)

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UNITED STATES

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Wout Bittremieux

University of Antwerp

BELGIUM

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Niema Moshiri

Research Interests

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Articles (17)

CompactTree: a lightweight header-only C++ library and Python wrapper for ultra-large phylogenetics

DRAM-Based Acceleration of Open Modification Search in Hyperdimensional Space

Leveraging social networks for identification of people with HIV who are virally unsuppressed

ViralWasm: a client-side user-friendly web application suite for viral genomics

Safer at school early alert: an observational study of wastewater and surface monitoring to detect COVID-19 in elementary schools

RAPIDx: High-Performance ReRAM Processing In-Memory Accelerator for Sequence Alignment

Accelerating open modification spectral library searching on tensor core in high-dimensional space

HyperSpec: Ultrafast Mass Spectra Clustering in Hyperdimensional Space

ViralConsensus: a fast and memory-efficient tool for calling viral consensus genome sequences directly from read alignment data

Genomic surveillance reveals dynamic shifts in the connectivity of COVID-19 epidemics

GenoMiX: Accelerated Simultaneous Analysis of Human Genomics, Microbiome Metagenomics, and Viral Sequences

The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2

Accelerators for Classical Molecular Dynamics Simulations of Biomolecules

An Evaluation of Phylogenetic Workflows in Viral Molecular Epidemiology

NiemaGraphGen: A memory-efficient global-scale contact network simulation toolkit

Ten simple rules for attending your first conference

SEPIA: simulation-based evaluation of prioritization algorithms

Collaborators (7)

Anthony Veder

Elizabeth Leininger

Anna Ritz

Smruthi Karthikeyan

Rebecca Fielding-Miller

Joel O. Wertheim

Wout Bittremieux

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