Rui Yin

Assistant Professor

University of Florida
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About

Rui Yin is an Assistant Professor at the University of Florida, USA. His research areas include computational biology, predictive modeling in healthcare, and machine learning applications in genomics. His recent publications focus on developing frameworks and models for identifying genetic variants, predicting clinical outcomes, and analyzing multimodal data for mental state recognition. Additionally, he explores enzyme design and long non-coding RNA localization using advanced neural network techniques.

Articles (16)

Year:

2025

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2025

Analysis of brain signals is essential to the study of mental states and various neurological conditions. The two most prevalent noninvasive signals for measuring brain activities are electroencephalography (EEG) and functional near-infrared spectroscopy (fNIRS). EEG, characterized by its higher sampling frequency, captures more temporal features, while fNIRS, with a greater number of channels, provides richer spatial information. Although a few previous studies have explored the use of multimodal deep-learning models to analyze brain activity for both EEG and fNIRS, subject-independent training–testing split analysis remains underexplored. The results of the subject-independent setting directly show the model’s ability on unseen subjects, which is crucial for real-world applications. In this paper, we introduce EF-Net, a new CNN-based multimodal deep-learning model. We evaluate EF-Net on an EEG-fNIRS word generation (WG) dataset on the mental state recognition task, primarily focusing on the subject-independent setting. For completeness, we report results in the subject-dependent and subject-semidependent settings as well. We compare our model with five baseline approaches, including three traditional machine learning methods and two deep learning methods. EF-Net demonstrates superior performance in both accuracy and F1 score, surpassing these baselines. Our model achieves F1 scores of 99.36%, 98.31%, and 65.05% in the subject-dependent, subject-semidependent, and subject-independent settings, respectively, surpassing the best baseline F1 scores by 1.83%, 4.34%, and 2.13% These results highlight EF-Net’s capability to effectively learn and interpret mental states and brain activity across different and unseen subjects.

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2024

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2024

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2024

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2023

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2023

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2023

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2023

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2022

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2022

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2022

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2021

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2021

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2021

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2021

Collaborators (6)

Chi Xu

Nanyang Technological University (NTU)

SINGAPORE
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Chee Keong Kwoh

Nanyang Technological University (NTU)

SINGAPORE
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Zhuoyi Lin

Institute for Infocomm Research

SINGAPORE
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Ahmed Helmy

University of North Carolina

UNITED STATES
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Xiang Zhang

Assistant Professor

University of North Carolina at Charlotte

UNITED STATES
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Lei Feng

Assistant Professor

Singapore University of Technology and Design

SINGAPORE
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