Russ Altman

Stanford University

United States

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Articles (18)

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2025

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2022

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2022

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2021

Collaborators (5)

Jennifer Wilson

Assistant Professor

University of California, Los Angeles

UNITED STATES

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Le Cong

Assistant Professor

Stanford University

UNITED STATES

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Annie Chang

Icahn School of Medicine at Mount Sinai

UNITED STATES

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David Magnus

Stanford University

UNITED STATES

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Jake Lever

University of Glasgow

UNITED KINGDOM

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Russ Altman

Research Interests

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Articles (18)

Paying attention to attention: High attention sites as indicators of protein family and function in language models

Protein functional site annotation using local structure embeddings

Semi-supervised data-integrated feature importance enhances performance and interpretability of biological classification tasks

Unsupervised learning reveals landscape of local structural motifs across protein classes

Pool PaRTI: a PageRank-based pooling method for identifying critical residues and enhancing protein sequence representations

Leveraging large-scale biobank EHRs to enhance pharmacogenetics of cardiometabolic disease medications

Databases of ligand-binding pockets and protein-ligand interactions

Gene set proximity analysis: expanding gene set enrichment analysis through learned geometric embeddings, with drug-repurposing applications in COVID-19

Stronger regulation of AI in biomedicine

Associating biological context with protein-protein interactions through text mining at PubMed scale

Using GPT-3 to Build a Lexicon of Drugs of Abuse Synonyms for Social Media Pharmacovigilance

Multilingual translation for zero-shot biomedical classification using BioTranslator

Promises and challenges in pharmacoepigenetics

A Holy Grail — The Prediction of Protein Structure

A network paradigm predicts drug synergistic effects using downstream protein–protein interactions

Construction of disease-specific cytokine profiles by associating disease genes with immune responses

Challenges and opportunities in network-based solutions for biological questions

Large-scale labeling and assessment of sex bias in publicly available expression data

Collaborators (5)

Jennifer Wilson

Le Cong

Annie Chang

David Magnus

Jake Lever

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