Ryota Yamagami

Assistant professor

Ehime University

Japan

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Dr. Ryota Yamagami is an Assistant Professor at Ehime University, Japan. His research focuses on tRNA recognition mechanisms, RNA modifications, and the structural basis of enzyme function. Recent publications include studies on methyltransferases, aminoacyl-tRNA synthetases, and RNA-splicing endonucleases, contributing to our understanding of RNA biology and functional evolution.

Articles (13)

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2025

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2025

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2025

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2025

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2025

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2024

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2024

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2023

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2023

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2023

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2022

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2022

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2021

Collaborators (2)

Philip Bevilacqua

Professor of Chemistry

The Pennsylvania State University - University Park Campus

UNITED STATES

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Natsuhisa Oka

Professor

Gifu University

JAPAN

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Ryota Yamagami

Research Interests

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Articles (13)

Transfer RNA Recognition Mechanism of Thermoplasma acidophilum Trm56, a SPOUT tRNA Methyltransferase that Possesses an Unusually Long C-terminal Region

Recombinant expression and purification of wheat aminoacyl-tRNA synthetases and IRES-dependent polypeptide synthesis with homogeneously derived purified factors

Structural basis of substrate diversity and functional evolution of archaeal RNA-splicing endonucleases

A transfer RNA methyltransferase with an unusual domain composition catalyzes 2′-O-methylation at position 6 in tRNA

tRNA pseudouridine synthase D (TruD) fromThermus thermophilusmodifies U13 in tRNAAsp, tRNAGlu, and tRNAGlnand U35 in tRNATyr

ArcS from Thermococcus kodakarensis transfers L-lysine to preQ0 nucleoside derivatives as minimum substrate RNAs

Rational design of oligonucleotides for enhanced in vitro transcription of small RNA

A selective and sensitive detection system for 4-thiouridine modification in RNA

Application of mutational profiling: New functional analyses reveal the tRNA recognition mechanism of tRNA m1A22 methyltransferase

RNA folding studies inside peptide-rich droplets reveal roles of modified nucleosides at the origin of life

Genome-wide analysis of the in vivo tRNA structurome reveals RNA structural and modification dynamics under heat stress

Required Elements in tRNA for Methylation by the Eukaryotic tRNA (Guanine-<i>N</i><sup>2</sup>-) Methyltransferase (Trm11-Trm112 Complex)

Functional Roles of Chelated Magnesium Ions in RNA Folding and Function

Collaborators (2)

Philip Bevilacqua

Natsuhisa Oka

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