S. Padmanabhan

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Professor S. Padmanabhan is a faculty member at the Instituto de Química Física "Rocasolano", CSIC in Spain. His research areas encompass microbial photoregulation, coenzyme interactions, and genomic studies related to Myxococcus xanthus and Mucorales fungi. Recent publications highlight his work on the structural basis of CRISPR-Cas defense systems and innovative signaling mechanisms in bacterial photoreceptors.

Articles (8)

Coenzyme B 12 (AdoCbl; 5′‐deoxy‐5′‐adenosylcobalamin), the quintessential biological organometallic radical catalyst, has a formerly unanticipated, yet extensive, role in photoregulation in bacteria. The light‐responsive cobalt‐corrin AdoCbl performs this nonenzymatic role by facilitating the assembly of CarH photoreceptors into DNA‐binding tetramers in the dark, suppressing gene expression. Conversely, exposure to light triggers the decomposition of this AdoCbl‐bound complex by a still elusive photochemical mechanism, activating gene expression. Here, we have examined AdoRhbl, the non‐natural rhodium analogue of AdoCbl, as a photostable isostructural surrogate for AdoCbl. We show that AdoRhbl closely emulates AdoCbl in its uptake by bacterial cells and structural functionality as a regulatory ligand for CarH tetramerization, DNA binding, and repressor activity. Remarkably, we find AdoRhbl is photostable even when bound “base‐off/His‐on” to CarH in vitro and in vivo. Thus, AdoRhbl, an antivitamin B 12 , also represents an unprecedented anti‐photoregulatory ligand, opening a pathway to precisely target biomimetic inhibition of AdoCbl‐based photoregulation, with new possibilities for selective antibacterial applications. Computational biomolecular analysis of AdoRhbl binding to CarH yields detailed structural insights into this complex, which suggest that the adenosyl group of photoexcited AdoCbl bound to CarH may specifically undergo a concerted non‐radical syn ‐1,2‐elimination mechanism, an aspect not previously considered for this photoreceptor.

Year:

2024

Year:

2024

Year:

2023

Year:

2022

Year:

2022

Year:

2021

Year:

2021

Year:

2020

Collaborators (10)

Arkaprabha Konar

Assistant Professor

Kent State University

UNITED STATES
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Antonio Iniesta

Associate Professor (Profesor Titular)

Universidad de Murcia

SPAIN
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Markos Koutmos

-

UNITED STATES
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Eusebio Navarro

Universidad de Murcia

SPAIN
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Bernhard Kräutler

-

AUSTRIA
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Montserrat Elías-Arnanz

Professor of Genetics

Universidad de Murcia

SPAIN
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Rubén Zapata-Pérez

Universidad Católica San Antonio de Murcia

SPAIN
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Aniruddha Deb

University of Michigan

UNITED STATES
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Roseanne J Sension

University of Michigan

UNITED STATES
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Francisco Esteban Nicolás

Universidad de Murcia

SPAIN
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