S. Padmanabhan
Professor
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About
Professor S. Padmanabhan is a faculty member at the Instituto de Química Física "Rocasolano", CSIC in Spain. His research areas encompass microbial photoregulation, coenzyme interactions, and genomic studies related to Myxococcus xanthus and Mucorales fungi. Recent publications highlight his work on the structural basis of CRISPR-Cas defense systems and innovative signaling mechanisms in bacterial photoreceptors.
Articles (8)
Coenzyme B 12 (AdoCbl; 5′‐deoxy‐5′‐adenosylcobalamin), the quintessential biological organometallic radical catalyst, has a formerly unanticipated, yet extensive, role in photoregulation in bacteria. The light‐responsive cobalt‐corrin AdoCbl performs this nonenzymatic role by facilitating the assembly of CarH photoreceptors into DNA‐binding tetramers in the dark, suppressing gene expression. Conversely, exposure to light triggers the decomposition of this AdoCbl‐bound complex by a still elusive photochemical mechanism, activating gene expression. Here, we have examined AdoRhbl, the non‐natural rhodium analogue of AdoCbl, as a photostable isostructural surrogate for AdoCbl. We show that AdoRhbl closely emulates AdoCbl in its uptake by bacterial cells and structural functionality as a regulatory ligand for CarH tetramerization, DNA binding, and repressor activity. Remarkably, we find AdoRhbl is photostable even when bound “base‐off/His‐on” to CarH in vitro and in vivo. Thus, AdoRhbl, an antivitamin B 12 , also represents an unprecedented anti‐photoregulatory ligand, opening a pathway to precisely target biomimetic inhibition of AdoCbl‐based photoregulation, with new possibilities for selective antibacterial applications. Computational biomolecular analysis of AdoRhbl binding to CarH yields detailed structural insights into this complex, which suggest that the adenosyl group of photoexcited AdoCbl bound to CarH may specifically undergo a concerted non‐radical syn ‐1,2‐elimination mechanism, an aspect not previously considered for this photoreceptor.
Year:
2024
Year:
2024
Year:
2023
Year:
2022
Year:
2022
Year:
2021
Year:
2021
Year:
2020
Collaborators (10)
Arkaprabha Konar
Assistant Professor
Kent State University
Antonio Iniesta
Associate Professor (Profesor Titular)
Universidad de Murcia
Markos Koutmos
-
Eusebio Navarro
Universidad de Murcia
Bernhard Kräutler
-
Montserrat Elías-Arnanz
Professor of Genetics
Universidad de Murcia
Rubén Zapata-Pérez
Universidad Católica San Antonio de Murcia
Aniruddha Deb
University of Michigan
Roseanne J Sension
University of Michigan
Francisco Esteban Nicolás
Universidad de Murcia
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