Shuji Shigenobu

教授/Professor

基礎生物学研究所/National Institute for Basic Biology

Japan

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About

Shuji Shigenobu is a Professor at the National Institute for Basic Biology in Japan. His research focuses on genomic and molecular biology, with recent articles exploring topics such as CRISPR/Cas9 genome editing, symbiotic relationships in Buchnera aphidicola, and nutrient allocation in Arabidopsis. He has also contributed to the assembly and annotation of genomes in various insect species, advancing the understanding of their biological systems.

Articles (26)

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2025

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2022

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2022

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2022

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2022

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2022

Collaborators (28)

Masaru K. Hojo

JAPAN

Shuji Shigenobu

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Articles (26)

Comprehensive genome annotation of Trilocha varians, a new model species of Lepidopteran insects

A chromosome-level genome assembly of wild silkmoth, Bombyx mandarina

Co-profiling of single-cell gene expression and chromatin landscapes in stickleback pituitary

Refined CRISPR/Cas9 genome editing in the pea aphid uncovers the essential roles of Laccase2 in overwintering egg adaptation

Mouse-Geneformer: A deep learning model for mouse single-cell transcriptome and its cross-species utility

Targeted disruption of the cls gene in Buchnera aphidicola impairs membrane integrity and host symbiont dynamics

Draft genome sequences of Buchnera aphidicola from three aphid species (Hemiptera: Aphididae: Eriosomatinae) associated with gall formation on elm trees

LIPID RICH 1 modulates allocation of carbon between starch and triacylglycerol in Arabidopsis leaves

Genome assembly of the temporary socially parasitic spiny ant Polyrhachis lamellidens and its host Camponotus japonicus

Immobilization secondary to cell death of muscle precursors with a dual transcriptional signature contributes to the emu wing skeletal pattern

Adaptive Evolution and Functional Differentiation of Testis-Expressed Genes in Theria

Odd-Paired is Involved in Morphological Divergence of Snail-Feeding Beetles

Slow decrease in temperature produces readthrough transcripts in mammalian hibernation

In vivo interference of pea aphid endosymbiont Buchnera groEL gene by synthetic peptide nucleic acids

Arabidopsis KNS3 and its two homologs mediate endoplasmic reticulum-to-plasma membrane traffic of boric acid channels

The genome of <i>Lyophyllum shimeji</i> provides insight into the initial evolution of ectomycorrhizal fungal genomes

Monoterpene glucosides in Eustoma grandiflorum roots promote hyphal branching in arbuscular mycorrhizal fungi

Gene expression profiles of chemosensory genes of termite soldier and worker antennae

Autoactivation of mycorrhizal symbiosis signaling through gibberellin deactivation in orchid seed germination

Genomic and transcriptomic analyses of the subterranean termite Reticulitermes speratus : Gene duplication facilitates social evolution

Complex host/symbiont integration of a multi-partner symbiotic system in the eusocial aphid Ceratovacuna japonica

Gene expression profiling before and after internode culture for adventitious shoot formation in ipecac

Ploidy dynamics in aphid host cells harboring bacterial symbionts

Reproductive constraint in the social aphid Ceratovacuna japonica: Sterility regulation in the soldier caste of a viviparous insect

Massive expression of cysteine-containing proteins causes abnormal elongation of yeast cells by perturbing the proteasome

Aphid hologenomics: current status and future challenges

Collaborators (28)

Masaru K. Hojo

Takashi Makino

Hironori Iwai

Asano Ishikawa

Hisao Moriya

Satoshi Miyazaki

Katsushi Yamaguchi

Hironobu Fujiyoshi

Toru Shimada

Kiyoto Maekawa

Hironori Kaminaka

Kotomi Ueno

Tomonari Nozaki

Shunta Yorimoto

Mitsuyasu Hasebe

Takehiro Kamiya

Toru Kawanishi

Ingrid Rosenburg Cordeiro

Masataka Okabe

Masayoshi Kawaguchi

Kohei Oguchi

Jung Lee

Yoshifumi Yamaguchi

Toru Fujiwara

Shinichi Yoda

Mitsunori Seo

Masahiro Kasahara

Gaku Tokuda

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